Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02865

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02863 and MPMX19_02864 are separated by 82 nucleotidesMPMX19_02864 and MPMX19_02865 are separated by 11 nucleotidesMPMX19_02865 and MPMX19_02866 overlap by 4 nucleotides MPMX19_02863: MPMX19_02863 - putative TonB-dependent receptor BfrD, at 106,936 to 109,233 _02863 MPMX19_02864: MPMX19_02864 - PKHD-type hydroxylase, at 109,316 to 110,002 _02864 MPMX19_02865: MPMX19_02865 - hypothetical protein, at 110,014 to 110,676 _02865 MPMX19_02866: MPMX19_02866 - 4-hydroxymandelate oxidase, at 110,673 to 111,752 _02866 Position (kb) 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 109.063 kb on + strandat 109.063 kb on + strandat 109.063 kb on + strandat 109.064 kb on - strandat 109.064 kb on - strandat 109.093 kb on + strandat 109.094 kb on - strandat 109.129 kb on + strandat 109.153 kb on + strandat 109.153 kb on + strandat 109.153 kb on + strandat 109.153 kb on + strandat 109.153 kb on + strandat 109.153 kb on + strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.300 kb on + strandat 109.300 kb on + strandat 109.300 kb on + strandat 109.301 kb on - strandat 109.301 kb on - strandat 109.301 kb on - strandat 109.301 kb on - strandat 109.301 kb on - strandat 109.301 kb on - strandat 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.592 kb on + strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.593 kb on - strand, within MPMX19_02864at 109.598 kb on + strand, within MPMX19_02864at 109.599 kb on - strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.697 kb on + strand, within MPMX19_02864at 109.698 kb on - strand, within MPMX19_02864at 109.698 kb on - strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.730 kb on + strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.731 kb on - strand, within MPMX19_02864at 109.775 kb on + strand, within MPMX19_02864at 109.776 kb on - strand, within MPMX19_02864at 109.776 kb on - strand, within MPMX19_02864at 109.886 kb on + strand, within MPMX19_02864at 109.887 kb on - strand, within MPMX19_02864at 109.887 kb on - strand, within MPMX19_02864at 109.887 kb on - strand, within MPMX19_02864at 109.887 kb on - strand, within MPMX19_02864at 109.887 kb on - strand, within MPMX19_02864at 109.967 kb on + strandat 109.967 kb on + strandat 109.968 kb on - strandat 110.221 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.329 kb on + strand, within MPMX19_02865at 110.330 kb on - strand, within MPMX19_02865at 110.330 kb on - strand, within MPMX19_02865at 110.569 kb on + strand, within MPMX19_02865at 110.569 kb on + strand, within MPMX19_02865at 110.569 kb on + strand, within MPMX19_02865at 110.569 kb on + strand, within MPMX19_02865at 110.570 kb on - strand, within MPMX19_02865at 110.709 kb on + strandat 110.709 kb on + strandat 110.709 kb on + strandat 110.709 kb on + strandat 110.710 kb on - strandat 110.754 kb on + strandat 110.754 kb on + strandat 110.754 kb on + strandat 110.754 kb on + strandat 110.755 kb on - strandat 110.755 kb on - strandat 110.755 kb on - strandat 110.755 kb on - strandat 110.896 kb on - strand, within MPMX19_02866at 110.896 kb on - strand, within MPMX19_02866at 110.896 kb on - strand, within MPMX19_02866at 110.896 kb on - strand, within MPMX19_02866at 111.023 kb on - strand, within MPMX19_02866at 111.069 kb on + strand, within MPMX19_02866at 111.070 kb on - strand, within MPMX19_02866at 111.070 kb on - strand, within MPMX19_02866at 111.458 kb on + strand, within MPMX19_02866at 111.598 kb on + strand, within MPMX19_02866at 111.598 kb on + strand, within MPMX19_02866at 111.598 kb on + strand, within MPMX19_02866at 111.598 kb on + strand, within MPMX19_02866at 111.598 kb on + strand, within MPMX19_02866at 111.599 kb on - strand, within MPMX19_02866at 111.599 kb on - strand, within MPMX19_02866

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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109,063 + +1.1
109,063 + -1.7
109,063 + -1.7
109,064 - -0.5
109,064 - +0.3
109,093 + -0.7
109,094 - -1.0
109,129 + -1.7
109,153 + -1.1
109,153 + +0.1
109,153 + -0.2
109,153 + +0.7
109,153 + -0.4
109,153 + -2.1
109,154 - +0.1
109,154 - -0.3
109,154 - -1.3
109,154 - -0.0
109,154 - -1.7
109,154 - -0.7
109,154 - -0.6
109,154 - -0.1
109,154 - -0.0
109,154 - +0.7
109,154 - +0.8
109,154 - -0.8
109,300 + +0.8
109,300 + +0.5
109,300 + -0.5
109,301 - -0.3
109,301 - +0.1
109,301 - +0.5
109,301 - +0.3
109,301 - -0.4
109,301 - -0.5
109,592 + MPMX19_02864 0.40 +0.7
109,592 + MPMX19_02864 0.40 +1.8
109,592 + MPMX19_02864 0.40 -0.3
109,592 + MPMX19_02864 0.40 +0.9
109,592 + MPMX19_02864 0.40 -0.4
109,592 + MPMX19_02864 0.40 +0.7
109,592 + MPMX19_02864 0.40 -0.3
109,593 - MPMX19_02864 0.40 -0.5
109,593 - MPMX19_02864 0.40 -0.5
109,593 - MPMX19_02864 0.40 -0.4
109,593 - MPMX19_02864 0.40 -1.7
109,593 - MPMX19_02864 0.40 -0.5
109,593 - MPMX19_02864 0.40 +0.2
109,593 - MPMX19_02864 0.40 +1.9
109,593 - MPMX19_02864 0.40 +2.2
109,593 - MPMX19_02864 0.40 -1.0
109,593 - MPMX19_02864 0.40 +0.2
109,593 - MPMX19_02864 0.40 -0.8
109,593 - MPMX19_02864 0.40 +0.1
109,598 + MPMX19_02864 0.41 +0.3
109,599 - MPMX19_02864 0.41 +0.1
109,697 + MPMX19_02864 0.55 -0.5
109,697 + MPMX19_02864 0.55 +1.3
109,697 + MPMX19_02864 0.55 -1.9
109,697 + MPMX19_02864 0.55 -0.7
109,697 + MPMX19_02864 0.55 -0.5
109,697 + MPMX19_02864 0.55 +0.9
109,697 + MPMX19_02864 0.55 -0.4
109,698 - MPMX19_02864 0.56 +0.0
109,698 - MPMX19_02864 0.56 +0.3
109,730 + MPMX19_02864 0.60 +1.0
109,730 + MPMX19_02864 0.60 -0.0
109,730 + MPMX19_02864 0.60 -2.5
109,730 + MPMX19_02864 0.60 +0.1
109,730 + MPMX19_02864 0.60 +1.5
109,730 + MPMX19_02864 0.60 -1.7
109,730 + MPMX19_02864 0.60 -0.3
109,731 - MPMX19_02864 0.60 -0.2
109,731 - MPMX19_02864 0.60 +0.5
109,731 - MPMX19_02864 0.60 +0.1
109,731 - MPMX19_02864 0.60 -1.0
109,731 - MPMX19_02864 0.60 -1.4
109,731 - MPMX19_02864 0.60 -0.0
109,731 - MPMX19_02864 0.60 -0.5
109,775 + MPMX19_02864 0.67 +1.7
109,776 - MPMX19_02864 0.67 +0.1
109,776 - MPMX19_02864 0.67 -0.5
109,886 + MPMX19_02864 0.83 +1.4
109,887 - MPMX19_02864 0.83 -1.9
109,887 - MPMX19_02864 0.83 -2.9
109,887 - MPMX19_02864 0.83 -0.1
109,887 - MPMX19_02864 0.83 -1.1
109,887 - MPMX19_02864 0.83 -0.0
109,967 + +1.5
109,967 + -2.3
109,968 - +1.2
110,221 + MPMX19_02865 0.31 -0.6
110,329 + MPMX19_02865 0.48 -0.4
110,329 + MPMX19_02865 0.48 -0.2
110,329 + MPMX19_02865 0.48 -1.1
110,329 + MPMX19_02865 0.48 +1.3
110,329 + MPMX19_02865 0.48 -1.3
110,329 + MPMX19_02865 0.48 +0.3
110,330 - MPMX19_02865 0.48 -1.6
110,330 - MPMX19_02865 0.48 +0.1
110,569 + MPMX19_02865 0.84 +0.8
110,569 + MPMX19_02865 0.84 -0.0
110,569 + MPMX19_02865 0.84 -0.7
110,569 + MPMX19_02865 0.84 +0.3
110,570 - MPMX19_02865 0.84 -2.0
110,709 + -0.5
110,709 + -0.5
110,709 + -0.1
110,709 + -0.0
110,710 - -0.2
110,754 + +0.3
110,754 + -0.5
110,754 + +0.4
110,754 + -1.8
110,755 - -0.7
110,755 - +0.8
110,755 - -0.4
110,755 - +0.3
110,896 - MPMX19_02866 0.21 -0.2
110,896 - MPMX19_02866 0.21 +2.1
110,896 - MPMX19_02866 0.21 -1.1
110,896 - MPMX19_02866 0.21 -0.7
111,023 - MPMX19_02866 0.32 +1.0
111,069 + MPMX19_02866 0.37 +0.7
111,070 - MPMX19_02866 0.37 -0.6
111,070 - MPMX19_02866 0.37 +0.4
111,458 + MPMX19_02866 0.73 -1.0
111,598 + MPMX19_02866 0.86 +0.8
111,598 + MPMX19_02866 0.86 -0.1
111,598 + MPMX19_02866 0.86 +0.5
111,598 + MPMX19_02866 0.86 +1.5
111,598 + MPMX19_02866 0.86 +0.8
111,599 - MPMX19_02866 0.86 +1.0
111,599 - MPMX19_02866 0.86 -2.1

Or see this region's nucleotide sequence