Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02771

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02770 and MPMX19_02771 are separated by 118 nucleotidesMPMX19_02771 and MPMX19_02772 are separated by 230 nucleotides MPMX19_02770: MPMX19_02770 - C4-dicarboxylic acid transporter DauA, at 1,957 to 3,696 _02770 MPMX19_02771: MPMX19_02771 - hypothetical protein, at 3,815 to 4,075 _02771 MPMX19_02772: MPMX19_02772 - N-acetylcysteine deacetylase, at 4,306 to 5,475 _02772 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3.290 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.617 kb on + strandat 3.617 kb on + strandat 3.719 kb on - strandat 4.094 kb on - strandat 4.234 kb on + strandat 4.235 kb on - strandat 4.235 kb on - strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.855 kb on + strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.856 kb on - strand, within MPMX19_02772at 4.911 kb on + strand, within MPMX19_02772at 4.911 kb on + strand, within MPMX19_02772

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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3,290 + MPMX19_02770 0.77 -0.3
3,308 + MPMX19_02770 0.78 -0.1
3,308 + MPMX19_02770 0.78 -0.3
3,308 + MPMX19_02770 0.78 +0.3
3,308 + MPMX19_02770 0.78 +0.4
3,308 + MPMX19_02770 0.78 +0.6
3,308 + MPMX19_02770 0.78 +0.3
3,308 + MPMX19_02770 0.78 -0.6
3,308 + MPMX19_02770 0.78 -0.9
3,308 + MPMX19_02770 0.78 +0.3
3,308 + MPMX19_02770 0.78 +0.1
3,309 - MPMX19_02770 0.78 -0.7
3,309 - MPMX19_02770 0.78 -0.7
3,309 - MPMX19_02770 0.78 -0.2
3,309 - MPMX19_02770 0.78 +1.0
3,309 - MPMX19_02770 0.78 +0.7
3,309 - MPMX19_02770 0.78 -0.0
3,309 - MPMX19_02770 0.78 +0.5
3,309 - MPMX19_02770 0.78 +0.3
3,309 - MPMX19_02770 0.78 +0.2
3,309 - MPMX19_02770 0.78 +0.4
3,500 + MPMX19_02770 0.89 -0.3
3,500 + MPMX19_02770 0.89 +0.3
3,500 + MPMX19_02770 0.89 -0.3
3,500 + MPMX19_02770 0.89 -1.2
3,501 - MPMX19_02770 0.89 -0.7
3,501 - MPMX19_02770 0.89 -0.9
3,501 - MPMX19_02770 0.89 +1.6
3,501 - MPMX19_02770 0.89 -0.9
3,617 + +0.5
3,617 + -1.9
3,719 - -0.3
4,094 - -0.0
4,234 + +0.1
4,235 - -1.4
4,235 - -0.4
4,293 + -0.1
4,293 + +0.9
4,293 + +0.6
4,293 + -0.9
4,293 + +0.1
4,293 + -0.3
4,294 - -1.3
4,294 - -0.4
4,294 - +0.9
4,294 - +0.4
4,855 + MPMX19_02772 0.47 +0.5
4,856 - MPMX19_02772 0.47 -0.0
4,856 - MPMX19_02772 0.47 +0.2
4,856 - MPMX19_02772 0.47 -1.3
4,911 + MPMX19_02772 0.52 +3.3
4,911 + MPMX19_02772 0.52 -0.7

Or see this region's nucleotide sequence