Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02114

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02113 and MPMX19_02114 are separated by 281 nucleotidesMPMX19_02114 and MPMX19_02115 are separated by 157 nucleotidesMPMX19_02115 and MPMX19_02116 are separated by 140 nucleotides MPMX19_02113: MPMX19_02113 - Dihydrolipoyl dehydrogenase 3, at 2,212,755 to 2,214,152 _02113 MPMX19_02114: MPMX19_02114 - hypothetical protein, at 2,214,434 to 2,214,592 _02114 MPMX19_02115: MPMX19_02115 - hypothetical protein, at 2,214,750 to 2,215,163 _02115 MPMX19_02116: MPMX19_02116 - Cold shock protein CspA, at 2,215,304 to 2,215,513 _02116 Position (kb) 2214 2215Strain fitness (log2 ratio) -1 0 1 2at 2214.242 kb on - strandat 2214.242 kb on - strandat 2214.242 kb on - strandat 2214.242 kb on - strandat 2214.242 kb on - strandat 2214.242 kb on - strandat 2214.376 kb on - strandat 2214.376 kb on - strandat 2214.590 kb on + strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.591 kb on - strandat 2214.778 kb on + strandat 2214.778 kb on + strandat 2214.779 kb on - strandat 2214.779 kb on - strandat 2215.106 kb on + strand, within MPMX19_02115at 2215.106 kb on + strand, within MPMX19_02115at 2215.106 kb on + strand, within MPMX19_02115at 2215.106 kb on + strand, within MPMX19_02115at 2215.106 kb on + strand, within MPMX19_02115at 2215.106 kb on + strand, within MPMX19_02115at 2215.107 kb on - strand, within MPMX19_02115at 2215.107 kb on - strand, within MPMX19_02115at 2215.107 kb on - strand, within MPMX19_02115at 2215.107 kb on - strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.118 kb on + strand, within MPMX19_02115at 2215.119 kb on - strand, within MPMX19_02115at 2215.119 kb on - strand, within MPMX19_02115at 2215.119 kb on - strand, within MPMX19_02115at 2215.119 kb on - strand, within MPMX19_02115at 2215.423 kb on + strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116at 2215.424 kb on - strand, within MPMX19_02116

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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2,214,242 - +0.8
2,214,242 - +1.6
2,214,242 - +0.1
2,214,242 - -0.0
2,214,242 - -0.7
2,214,242 - +0.2
2,214,376 - +0.3
2,214,376 - -0.7
2,214,590 + +1.1
2,214,591 - +0.1
2,214,591 - +0.9
2,214,591 - -0.1
2,214,591 - +0.5
2,214,591 - +0.7
2,214,591 - +1.3
2,214,591 - +0.8
2,214,591 - -0.8
2,214,778 + +1.8
2,214,778 + +0.9
2,214,779 - +0.1
2,214,779 - +1.6
2,215,106 + MPMX19_02115 0.86 +0.7
2,215,106 + MPMX19_02115 0.86 -0.3
2,215,106 + MPMX19_02115 0.86 -0.7
2,215,106 + MPMX19_02115 0.86 +0.2
2,215,106 + MPMX19_02115 0.86 -0.3
2,215,106 + MPMX19_02115 0.86 +0.9
2,215,107 - MPMX19_02115 0.86 -0.4
2,215,107 - MPMX19_02115 0.86 +0.4
2,215,107 - MPMX19_02115 0.86 +1.7
2,215,107 - MPMX19_02115 0.86 +0.2
2,215,118 + MPMX19_02115 0.89 -0.7
2,215,118 + MPMX19_02115 0.89 -1.0
2,215,118 + MPMX19_02115 0.89 -1.1
2,215,118 + MPMX19_02115 0.89 +0.3
2,215,118 + MPMX19_02115 0.89 +0.6
2,215,118 + MPMX19_02115 0.89 +0.3
2,215,119 - MPMX19_02115 0.89 +0.5
2,215,119 - MPMX19_02115 0.89 -0.7
2,215,119 - MPMX19_02115 0.89 +1.3
2,215,119 - MPMX19_02115 0.89 +1.3
2,215,423 + MPMX19_02116 0.57 +1.7
2,215,424 - MPMX19_02116 0.57 +0.3
2,215,424 - MPMX19_02116 0.57 -0.8
2,215,424 - MPMX19_02116 0.57 -1.4
2,215,424 - MPMX19_02116 0.57 -1.3
2,215,424 - MPMX19_02116 0.57 -1.3
2,215,424 - MPMX19_02116 0.57 -1.4
2,215,424 - MPMX19_02116 0.57 +0.1

Or see this region's nucleotide sequence