Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01255

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01254 and MPMX19_01255 are separated by 204 nucleotidesMPMX19_01255 and MPMX19_01256 are separated by 48 nucleotides MPMX19_01254: MPMX19_01254 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,304,886 to 1,305,926 _01254 MPMX19_01255: MPMX19_01255 - Sulfur carrier protein TusA, at 1,306,131 to 1,306,373 _01255 MPMX19_01256: MPMX19_01256 - hypothetical protein, at 1,306,422 to 1,307,648 _01256 Position (kb) 1306 1307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1305.137 kb on + strand, within MPMX19_01254at 1305.137 kb on + strand, within MPMX19_01254at 1305.137 kb on + strand, within MPMX19_01254at 1305.137 kb on + strand, within MPMX19_01254at 1305.138 kb on - strand, within MPMX19_01254at 1305.138 kb on - strand, within MPMX19_01254at 1305.138 kb on - strand, within MPMX19_01254at 1305.138 kb on - strand, within MPMX19_01254at 1305.138 kb on - strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.313 kb on + strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.314 kb on - strand, within MPMX19_01254at 1305.448 kb on + strand, within MPMX19_01254at 1305.448 kb on + strand, within MPMX19_01254at 1305.448 kb on + strand, within MPMX19_01254at 1305.448 kb on + strand, within MPMX19_01254at 1305.448 kb on + strand, within MPMX19_01254at 1305.449 kb on - strand, within MPMX19_01254at 1305.449 kb on - strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.460 kb on + strand, within MPMX19_01254at 1305.461 kb on - strand, within MPMX19_01254at 1305.461 kb on - strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.720 kb on + strand, within MPMX19_01254at 1305.721 kb on - strand, within MPMX19_01254at 1305.721 kb on - strand, within MPMX19_01254at 1305.721 kb on - strand, within MPMX19_01254at 1305.902 kb on + strandat 1305.902 kb on + strandat 1305.902 kb on + strandat 1305.902 kb on + strandat 1305.903 kb on - strandat 1305.903 kb on - strandat 1305.981 kb on + strandat 1305.981 kb on + strandat 1305.981 kb on + strandat 1305.982 kb on - strandat 1305.982 kb on - strandat 1305.982 kb on - strandat 1306.094 kb on + strandat 1306.095 kb on - strandat 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.236 kb on + strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.237 kb on - strand, within MPMX19_01255at 1306.350 kb on + strandat 1306.350 kb on + strandat 1306.350 kb on + strandat 1306.351 kb on - strandat 1306.488 kb on + strandat 1306.488 kb on + strandat 1306.488 kb on + strandat 1306.488 kb on + strandat 1306.489 kb on - strandat 1306.489 kb on - strandat 1306.489 kb on - strandat 1306.489 kb on - strandat 1306.500 kb on - strandat 1306.635 kb on + strand, within MPMX19_01256at 1306.635 kb on + strand, within MPMX19_01256at 1306.635 kb on + strand, within MPMX19_01256at 1306.635 kb on + strand, within MPMX19_01256at 1306.635 kb on + strand, within MPMX19_01256at 1306.636 kb on - strand, within MPMX19_01256at 1306.636 kb on - strand, within MPMX19_01256at 1306.636 kb on - strand, within MPMX19_01256at 1306.636 kb on - strand, within MPMX19_01256at 1306.758 kb on - strand, within MPMX19_01256at 1306.861 kb on - strand, within MPMX19_01256at 1306.861 kb on - strand, within MPMX19_01256at 1306.861 kb on - strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.956 kb on + strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1306.957 kb on - strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.193 kb on + strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256at 1307.194 kb on - strand, within MPMX19_01256

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,305,137 + MPMX19_01254 0.24 -0.6
1,305,137 + MPMX19_01254 0.24 -0.6
1,305,137 + MPMX19_01254 0.24 -0.0
1,305,137 + MPMX19_01254 0.24 +1.5
1,305,138 - MPMX19_01254 0.24 +0.4
1,305,138 - MPMX19_01254 0.24 +0.3
1,305,138 - MPMX19_01254 0.24 -0.8
1,305,138 - MPMX19_01254 0.24 -1.8
1,305,138 - MPMX19_01254 0.24 -0.8
1,305,313 + MPMX19_01254 0.41 -1.1
1,305,313 + MPMX19_01254 0.41 +0.4
1,305,313 + MPMX19_01254 0.41 -0.2
1,305,313 + MPMX19_01254 0.41 -0.0
1,305,313 + MPMX19_01254 0.41 -1.8
1,305,313 + MPMX19_01254 0.41 +0.2
1,305,313 + MPMX19_01254 0.41 -0.7
1,305,313 + MPMX19_01254 0.41 -0.2
1,305,313 + MPMX19_01254 0.41 -0.2
1,305,313 + MPMX19_01254 0.41 -0.5
1,305,313 + MPMX19_01254 0.41 +0.3
1,305,313 + MPMX19_01254 0.41 -0.2
1,305,313 + MPMX19_01254 0.41 +0.2
1,305,313 + MPMX19_01254 0.41 +0.8
1,305,313 + MPMX19_01254 0.41 -0.8
1,305,313 + MPMX19_01254 0.41 -0.8
1,305,313 + MPMX19_01254 0.41 +0.2
1,305,313 + MPMX19_01254 0.41 +0.3
1,305,313 + MPMX19_01254 0.41 -0.4
1,305,313 + MPMX19_01254 0.41 -2.1
1,305,313 + MPMX19_01254 0.41 -0.3
1,305,313 + MPMX19_01254 0.41 -0.2
1,305,313 + MPMX19_01254 0.41 -0.1
1,305,313 + MPMX19_01254 0.41 -0.5
1,305,314 - MPMX19_01254 0.41 -0.0
1,305,314 - MPMX19_01254 0.41 -1.4
1,305,314 - MPMX19_01254 0.41 +0.9
1,305,314 - MPMX19_01254 0.41 +0.5
1,305,314 - MPMX19_01254 0.41 -1.6
1,305,314 - MPMX19_01254 0.41 -0.8
1,305,314 - MPMX19_01254 0.41 -0.7
1,305,314 - MPMX19_01254 0.41 -0.5
1,305,314 - MPMX19_01254 0.41 -1.4
1,305,314 - MPMX19_01254 0.41 -0.0
1,305,314 - MPMX19_01254 0.41 +0.2
1,305,314 - MPMX19_01254 0.41 -0.7
1,305,314 - MPMX19_01254 0.41 +0.5
1,305,314 - MPMX19_01254 0.41 -2.5
1,305,314 - MPMX19_01254 0.41 -1.1
1,305,314 - MPMX19_01254 0.41 -0.8
1,305,314 - MPMX19_01254 0.41 -0.4
1,305,314 - MPMX19_01254 0.41 -2.1
1,305,314 - MPMX19_01254 0.41 +0.2
1,305,314 - MPMX19_01254 0.41 +0.0
1,305,448 + MPMX19_01254 0.54 +0.3
1,305,448 + MPMX19_01254 0.54 -0.4
1,305,448 + MPMX19_01254 0.54 -0.8
1,305,448 + MPMX19_01254 0.54 -0.7
1,305,448 + MPMX19_01254 0.54 +1.0
1,305,449 - MPMX19_01254 0.54 -1.0
1,305,449 - MPMX19_01254 0.54 -0.8
1,305,460 + MPMX19_01254 0.55 -0.8
1,305,460 + MPMX19_01254 0.55 -1.0
1,305,460 + MPMX19_01254 0.55 +0.6
1,305,460 + MPMX19_01254 0.55 -0.8
1,305,460 + MPMX19_01254 0.55 +1.0
1,305,460 + MPMX19_01254 0.55 -0.1
1,305,461 - MPMX19_01254 0.55 +0.3
1,305,461 - MPMX19_01254 0.55 +0.5
1,305,720 + MPMX19_01254 0.80 -1.3
1,305,720 + MPMX19_01254 0.80 -1.1
1,305,720 + MPMX19_01254 0.80 -0.8
1,305,720 + MPMX19_01254 0.80 +0.4
1,305,720 + MPMX19_01254 0.80 -1.3
1,305,720 + MPMX19_01254 0.80 -0.1
1,305,720 + MPMX19_01254 0.80 +0.6
1,305,721 - MPMX19_01254 0.80 -2.0
1,305,721 - MPMX19_01254 0.80 +0.2
1,305,721 - MPMX19_01254 0.80 -0.5
1,305,902 + +0.2
1,305,902 + -2.3
1,305,902 + -0.9
1,305,902 + -0.4
1,305,903 - -0.6
1,305,903 - -1.1
1,305,981 + +0.6
1,305,981 + -0.4
1,305,981 + -2.8
1,305,982 - -0.0
1,305,982 - -0.8
1,305,982 - -0.5
1,306,094 + -0.7
1,306,095 - -0.2
1,306,236 + MPMX19_01255 0.43 -0.1
1,306,236 + MPMX19_01255 0.43 -0.4
1,306,236 + MPMX19_01255 0.43 -0.8
1,306,236 + MPMX19_01255 0.43 -0.1
1,306,236 + MPMX19_01255 0.43 -1.4
1,306,236 + MPMX19_01255 0.43 +1.3
1,306,236 + MPMX19_01255 0.43 -2.1
1,306,236 + MPMX19_01255 0.43 +0.2
1,306,237 - MPMX19_01255 0.44 -0.4
1,306,237 - MPMX19_01255 0.44 -1.6
1,306,237 - MPMX19_01255 0.44 -2.0
1,306,237 - MPMX19_01255 0.44 +1.2
1,306,237 - MPMX19_01255 0.44 -1.1
1,306,237 - MPMX19_01255 0.44 -0.6
1,306,237 - MPMX19_01255 0.44 -0.8
1,306,237 - MPMX19_01255 0.44 -0.1
1,306,237 - MPMX19_01255 0.44 -0.4
1,306,350 + -0.3
1,306,350 + +0.6
1,306,350 + -1.8
1,306,351 - +0.2
1,306,488 + +0.0
1,306,488 + -2.0
1,306,488 + -0.1
1,306,488 + +1.4
1,306,489 - -0.5
1,306,489 - +1.1
1,306,489 - +0.1
1,306,489 - +0.6
1,306,500 - -0.1
1,306,635 + MPMX19_01256 0.17 -2.4
1,306,635 + MPMX19_01256 0.17 -3.8
1,306,635 + MPMX19_01256 0.17 -0.4
1,306,635 + MPMX19_01256 0.17 +1.2
1,306,635 + MPMX19_01256 0.17 -0.2
1,306,636 - MPMX19_01256 0.17 -0.8
1,306,636 - MPMX19_01256 0.17 +0.1
1,306,636 - MPMX19_01256 0.17 +0.7
1,306,636 - MPMX19_01256 0.17 +0.1
1,306,758 - MPMX19_01256 0.27 -0.6
1,306,861 - MPMX19_01256 0.36 +0.0
1,306,861 - MPMX19_01256 0.36 +0.6
1,306,861 - MPMX19_01256 0.36 -0.1
1,306,956 + MPMX19_01256 0.44 -1.7
1,306,956 + MPMX19_01256 0.44 +0.9
1,306,956 + MPMX19_01256 0.44 -1.6
1,306,956 + MPMX19_01256 0.44 +1.5
1,306,956 + MPMX19_01256 0.44 -0.0
1,306,956 + MPMX19_01256 0.44 -1.2
1,306,956 + MPMX19_01256 0.44 +0.4
1,306,956 + MPMX19_01256 0.44 -0.8
1,306,956 + MPMX19_01256 0.44 -1.0
1,306,956 + MPMX19_01256 0.44 -0.6
1,306,956 + MPMX19_01256 0.44 -0.4
1,306,956 + MPMX19_01256 0.44 -0.0
1,306,956 + MPMX19_01256 0.44 -0.0
1,306,956 + MPMX19_01256 0.44 +1.0
1,306,956 + MPMX19_01256 0.44 +0.6
1,306,956 + MPMX19_01256 0.44 +0.3
1,306,956 + MPMX19_01256 0.44 -1.0
1,306,956 + MPMX19_01256 0.44 +0.4
1,306,957 - MPMX19_01256 0.44 +0.4
1,306,957 - MPMX19_01256 0.44 +0.2
1,306,957 - MPMX19_01256 0.44 -0.3
1,306,957 - MPMX19_01256 0.44 -2.0
1,306,957 - MPMX19_01256 0.44 +0.2
1,306,957 - MPMX19_01256 0.44 -0.8
1,306,957 - MPMX19_01256 0.44 +0.4
1,306,957 - MPMX19_01256 0.44 +0.5
1,306,957 - MPMX19_01256 0.44 +0.5
1,306,957 - MPMX19_01256 0.44 -0.1
1,307,193 + MPMX19_01256 0.63 +0.2
1,307,193 + MPMX19_01256 0.63 +0.7
1,307,193 + MPMX19_01256 0.63 +0.4
1,307,193 + MPMX19_01256 0.63 +0.3
1,307,193 + MPMX19_01256 0.63 +1.9
1,307,193 + MPMX19_01256 0.63 -0.2
1,307,193 + MPMX19_01256 0.63 -0.4
1,307,193 + MPMX19_01256 0.63 -0.0
1,307,193 + MPMX19_01256 0.63 -1.4
1,307,193 + MPMX19_01256 0.63 -0.7
1,307,193 + MPMX19_01256 0.63 -0.2
1,307,193 + MPMX19_01256 0.63 -0.7
1,307,193 + MPMX19_01256 0.63 +0.6
1,307,193 + MPMX19_01256 0.63 -0.2
1,307,193 + MPMX19_01256 0.63 -0.7
1,307,193 + MPMX19_01256 0.63 -0.2
1,307,193 + MPMX19_01256 0.63 +1.6
1,307,193 + MPMX19_01256 0.63 -0.4
1,307,193 + MPMX19_01256 0.63 +0.7
1,307,193 + MPMX19_01256 0.63 +0.3
1,307,193 + MPMX19_01256 0.63 -0.2
1,307,194 - MPMX19_01256 0.63 +0.7
1,307,194 - MPMX19_01256 0.63 +0.3
1,307,194 - MPMX19_01256 0.63 +0.4
1,307,194 - MPMX19_01256 0.63 -0.7
1,307,194 - MPMX19_01256 0.63 +0.2
1,307,194 - MPMX19_01256 0.63 -1.4
1,307,194 - MPMX19_01256 0.63 +1.2
1,307,194 - MPMX19_01256 0.63 -1.8
1,307,194 - MPMX19_01256 0.63 +0.2
1,307,194 - MPMX19_01256 0.63 -1.0
1,307,194 - MPMX19_01256 0.63 +0.3
1,307,194 - MPMX19_01256 0.63 +1.2
1,307,194 - MPMX19_01256 0.63 -2.4
1,307,194 - MPMX19_01256 0.63 +0.8
1,307,194 - MPMX19_01256 0.63 -0.7
1,307,194 - MPMX19_01256 0.63 -0.6
1,307,194 - MPMX19_01256 0.63 +0.5
1,307,194 - MPMX19_01256 0.63 -0.9
1,307,194 - MPMX19_01256 0.63 +0.0
1,307,194 - MPMX19_01256 0.63 +0.3
1,307,194 - MPMX19_01256 0.63 -0.5
1,307,194 - MPMX19_01256 0.63 -0.1
1,307,194 - MPMX19_01256 0.63 +0.2
1,307,194 - MPMX19_01256 0.63 +0.4
1,307,194 - MPMX19_01256 0.63 -0.2
1,307,194 - MPMX19_01256 0.63 -1.3
1,307,194 - MPMX19_01256 0.63 -0.9
1,307,194 - MPMX19_01256 0.63 -1.3
1,307,194 - MPMX19_01256 0.63 -0.7
1,307,194 - MPMX19_01256 0.63 +0.9
1,307,194 - MPMX19_01256 0.63 -0.3

Or see this region's nucleotide sequence