Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00844

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00842 and MPMX19_00843 are separated by 0 nucleotidesMPMX19_00843 and MPMX19_00844 overlap by 8 nucleotidesMPMX19_00844 and MPMX19_00845 are separated by 93 nucleotidesMPMX19_00845 and MPMX19_00846 are separated by 510 nucleotides MPMX19_00842: MPMX19_00842 - Signal peptidase I, at 874,001 to 874,768 _00842 MPMX19_00843: MPMX19_00843 - Ribonuclease 3, at 874,769 to 875,554 _00843 MPMX19_00844: MPMX19_00844 - GTPase Era, at 875,547 to 876,731 _00844 MPMX19_00845: MPMX19_00845 - hypothetical protein, at 876,825 to 877,130 _00845 MPMX19_00846: MPMX19_00846 - hypothetical protein, at 877,641 to 877,934 _00846 Position (kb) 875 876 877Strain fitness (log2 ratio) -2 -1 0 1at 874.706 kb on + strandat 876.696 kb on + strandat 876.697 kb on - strandat 876.697 kb on - strandat 876.938 kb on + strand, within MPMX19_00845at 876.939 kb on - strand, within MPMX19_00845at 876.939 kb on - strand, within MPMX19_00845at 877.203 kb on + strandat 877.204 kb on - strandat 877.204 kb on - strandat 877.204 kb on - strandat 877.204 kb on - strandat 877.306 kb on + strandat 877.306 kb on + strandat 877.306 kb on + strandat 877.307 kb on - strandat 877.307 kb on - strandat 877.440 kb on + strandat 877.440 kb on + strandat 877.440 kb on + strandat 877.441 kb on - strandat 877.441 kb on - strandat 877.527 kb on - strandat 877.527 kb on - strandat 877.566 kb on + strandat 877.566 kb on + strandat 877.567 kb on - strandat 877.567 kb on - strandat 877.567 kb on - strandat 877.576 kb on - strandat 877.599 kb on + strandat 877.600 kb on - strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.622 kb on + strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.623 kb on - strandat 877.660 kb on + strandat 877.660 kb on + strandat 877.661 kb on - strandat 877.661 kb on - strandat 877.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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874,706 + -0.2
876,696 + -0.8
876,697 - -1.4
876,697 - -0.8
876,938 + MPMX19_00845 0.37 +0.1
876,939 - MPMX19_00845 0.37 -2.4
876,939 - MPMX19_00845 0.37 +0.4
877,203 + -0.7
877,204 - -1.6
877,204 - -0.8
877,204 - -0.0
877,204 - +0.5
877,306 + +0.7
877,306 + +0.0
877,306 + -0.1
877,307 - +0.6
877,307 - +0.2
877,440 + -1.1
877,440 + +1.5
877,440 + -1.1
877,441 - -0.4
877,441 - +1.6
877,527 - -0.8
877,527 - +0.5
877,566 + -0.7
877,566 + -0.4
877,567 - -0.9
877,567 - -0.2
877,567 - +0.5
877,576 - -0.8
877,599 + -0.8
877,600 - -2.4
877,622 + -1.7
877,622 + -1.3
877,622 + -1.1
877,622 + -2.0
877,622 + -2.5
877,622 + +0.5
877,622 + -0.8
877,623 - -0.7
877,623 - -0.1
877,623 - +0.1
877,623 - +0.6
877,660 + -1.0
877,660 + +0.1
877,661 - +0.0
877,661 - -1.1
877,661 - +0.7

Or see this region's nucleotide sequence