Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00476

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00474 and MPMX19_00475 are separated by 165 nucleotidesMPMX19_00475 and MPMX19_00476 are separated by 3 nucleotidesMPMX19_00476 and MPMX19_00477 are separated by 191 nucleotidesMPMX19_00477 and MPMX19_00478 are separated by 86 nucleotides MPMX19_00474: MPMX19_00474 - N-ethylmaleimide reductase, at 472,266 to 473,396 _00474 MPMX19_00475: MPMX19_00475 - hypothetical protein, at 473,562 to 474,224 _00475 MPMX19_00476: MPMX19_00476 - Protein RarD, at 474,228 to 475,154 _00476 MPMX19_00477: MPMX19_00477 - Glutaredoxin 4, at 475,346 to 475,681 _00477 MPMX19_00478: MPMX19_00478 - putative protein RP812, at 475,768 to 476,007 _00478 Position (kb) 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 473.236 kb on + strand, within MPMX19_00474at 473.236 kb on + strand, within MPMX19_00474at 473.236 kb on + strand, within MPMX19_00474at 473.236 kb on + strand, within MPMX19_00474at 473.236 kb on + strand, within MPMX19_00474at 473.236 kb on + strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.237 kb on - strand, within MPMX19_00474at 473.239 kb on + strand, within MPMX19_00474at 473.239 kb on + strand, within MPMX19_00474at 473.239 kb on + strand, within MPMX19_00474at 473.239 kb on + strand, within MPMX19_00474at 473.240 kb on - strand, within MPMX19_00474at 473.240 kb on - strand, within MPMX19_00474at 473.240 kb on - strand, within MPMX19_00474at 473.240 kb on - strand, within MPMX19_00474at 473.405 kb on + strandat 473.405 kb on + strandat 473.406 kb on - strandat 473.406 kb on - strandat 473.422 kb on + strandat 473.422 kb on + strandat 473.422 kb on + strandat 473.423 kb on - strandat 473.423 kb on - strandat 473.450 kb on - strandat 473.461 kb on + strandat 473.462 kb on - strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.491 kb on + strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.492 kb on - strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.495 kb on + strandat 473.496 kb on - strandat 473.496 kb on - strandat 473.503 kb on + strandat 473.503 kb on + strandat 473.503 kb on + strandat 473.503 kb on + strandat 473.503 kb on + strandat 473.504 kb on - strandat 473.504 kb on - strandat 473.507 kb on + strandat 473.507 kb on + strandat 473.507 kb on + strandat 473.507 kb on + strandat 473.507 kb on + strandat 473.507 kb on + strandat 473.508 kb on - strandat 473.508 kb on - strandat 473.510 kb on + strandat 473.511 kb on - strandat 473.522 kb on + strandat 473.522 kb on + strandat 473.523 kb on - strandat 473.772 kb on + strand, within MPMX19_00475at 473.772 kb on + strand, within MPMX19_00475at 473.772 kb on + strand, within MPMX19_00475at 473.773 kb on - strand, within MPMX19_00475at 473.773 kb on - strand, within MPMX19_00475at 473.773 kb on - strand, within MPMX19_00475at 473.773 kb on - strand, within MPMX19_00475at 473.817 kb on + strand, within MPMX19_00475at 474.229 kb on + strandat 474.229 kb on + strandat 474.229 kb on + strandat 474.229 kb on + strandat 474.229 kb on + strandat 474.230 kb on - strandat 474.230 kb on - strandat 474.230 kb on - strandat 474.355 kb on + strand, within MPMX19_00476at 474.355 kb on + strand, within MPMX19_00476at 474.355 kb on + strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.356 kb on - strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.397 kb on + strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.398 kb on - strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.550 kb on + strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.551 kb on - strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.637 kb on + strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.638 kb on - strand, within MPMX19_00476at 474.688 kb on + strand, within MPMX19_00476at 474.688 kb on + strand, within MPMX19_00476at 474.688 kb on + strand, within MPMX19_00476at 474.688 kb on + strand, within MPMX19_00476at 474.688 kb on + strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.689 kb on - strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.811 kb on + strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 474.812 kb on - strand, within MPMX19_00476at 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.081 kb on + strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.082 kb on - strandat 475.154 kb on + strandat 475.155 kb on - strandat 475.165 kb on + strandat 475.165 kb on + strandat 475.166 kb on - strandat 475.166 kb on - strandat 475.845 kb on - strand, within MPMX19_00478at 475.845 kb on - strand, within MPMX19_00478at 475.845 kb on - strand, within MPMX19_00478at 475.845 kb on - strand, within MPMX19_00478at 475.845 kb on - strand, within MPMX19_00478at 475.911 kb on - strand, within MPMX19_00478at 475.911 kb on - strand, within MPMX19_00478at 476.057 kb on - strandat 476.057 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.065 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strandat 476.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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473,236 + MPMX19_00474 0.86 -1.1
473,236 + MPMX19_00474 0.86 -0.5
473,236 + MPMX19_00474 0.86 -2.2
473,236 + MPMX19_00474 0.86 +0.4
473,236 + MPMX19_00474 0.86 +0.0
473,236 + MPMX19_00474 0.86 +0.7
473,237 - MPMX19_00474 0.86 -1.1
473,237 - MPMX19_00474 0.86 +0.7
473,237 - MPMX19_00474 0.86 +1.0
473,237 - MPMX19_00474 0.86 +0.7
473,237 - MPMX19_00474 0.86 +0.5
473,237 - MPMX19_00474 0.86 -0.6
473,237 - MPMX19_00474 0.86 +0.1
473,237 - MPMX19_00474 0.86 -0.1
473,237 - MPMX19_00474 0.86 +0.3
473,239 + MPMX19_00474 0.86 -0.8
473,239 + MPMX19_00474 0.86 -1.2
473,239 + MPMX19_00474 0.86 -2.3
473,239 + MPMX19_00474 0.86 +0.0
473,240 - MPMX19_00474 0.86 -1.6
473,240 - MPMX19_00474 0.86 +0.7
473,240 - MPMX19_00474 0.86 -0.2
473,240 - MPMX19_00474 0.86 -0.5
473,405 + +0.3
473,405 + +0.7
473,406 - +0.3
473,406 - +0.3
473,422 + -1.6
473,422 + -1.5
473,422 + -0.5
473,423 - +0.8
473,423 - -1.4
473,450 - +0.4
473,461 + -1.7
473,462 - -0.5
473,491 + +0.5
473,491 + +0.7
473,491 + +0.7
473,491 + +1.9
473,491 + +0.1
473,491 + +1.0
473,491 + -1.7
473,491 + -2.1
473,492 - -1.6
473,492 - -1.1
473,492 - -1.1
473,492 - -2.6
473,492 - -0.5
473,492 - +0.1
473,492 - -0.6
473,495 + +0.3
473,495 + +0.1
473,495 + -0.1
473,495 + +1.3
473,495 + -0.3
473,495 + -2.1
473,495 + -1.0
473,495 + -0.4
473,496 - +1.1
473,496 - -0.7
473,503 + +0.7
473,503 + -0.9
473,503 + +0.3
473,503 + -0.9
473,503 + +0.3
473,504 - -1.1
473,504 - +0.4
473,507 + +0.0
473,507 + -0.5
473,507 + -0.5
473,507 + +0.4
473,507 + +0.7
473,507 + -0.9
473,508 - -1.3
473,508 - -1.3
473,510 + -1.0
473,511 - +1.0
473,522 + -0.0
473,522 + -1.7
473,523 - +0.6
473,772 + MPMX19_00475 0.32 -1.9
473,772 + MPMX19_00475 0.32 -2.2
473,772 + MPMX19_00475 0.32 +0.3
473,773 - MPMX19_00475 0.32 -1.1
473,773 - MPMX19_00475 0.32 +1.5
473,773 - MPMX19_00475 0.32 +0.7
473,773 - MPMX19_00475 0.32 +0.3
473,817 + MPMX19_00475 0.38 +0.3
474,229 + -0.9
474,229 + +0.3
474,229 + -0.8
474,229 + +2.4
474,229 + -0.4
474,230 - -0.5
474,230 - -0.0
474,230 - -1.7
474,355 + MPMX19_00476 0.14 -0.1
474,355 + MPMX19_00476 0.14 -0.3
474,355 + MPMX19_00476 0.14 +0.1
474,356 - MPMX19_00476 0.14 -0.9
474,356 - MPMX19_00476 0.14 -1.7
474,356 - MPMX19_00476 0.14 +0.3
474,356 - MPMX19_00476 0.14 -0.6
474,356 - MPMX19_00476 0.14 +0.6
474,356 - MPMX19_00476 0.14 +0.3
474,356 - MPMX19_00476 0.14 +0.1
474,397 + MPMX19_00476 0.18 -0.1
474,397 + MPMX19_00476 0.18 +0.4
474,397 + MPMX19_00476 0.18 +0.4
474,397 + MPMX19_00476 0.18 +0.8
474,397 + MPMX19_00476 0.18 -1.1
474,397 + MPMX19_00476 0.18 -2.6
474,397 + MPMX19_00476 0.18 +0.4
474,397 + MPMX19_00476 0.18 +0.7
474,397 + MPMX19_00476 0.18 +0.8
474,397 + MPMX19_00476 0.18 -0.4
474,397 + MPMX19_00476 0.18 +0.3
474,397 + MPMX19_00476 0.18 -1.0
474,397 + MPMX19_00476 0.18 +0.3
474,397 + MPMX19_00476 0.18 -1.3
474,397 + MPMX19_00476 0.18 -0.6
474,398 - MPMX19_00476 0.18 +0.3
474,398 - MPMX19_00476 0.18 -3.6
474,398 - MPMX19_00476 0.18 -0.1
474,398 - MPMX19_00476 0.18 +0.3
474,398 - MPMX19_00476 0.18 -2.8
474,398 - MPMX19_00476 0.18 -3.1
474,398 - MPMX19_00476 0.18 +0.7
474,398 - MPMX19_00476 0.18 -0.1
474,398 - MPMX19_00476 0.18 -0.3
474,398 - MPMX19_00476 0.18 -0.5
474,398 - MPMX19_00476 0.18 -0.0
474,398 - MPMX19_00476 0.18 -0.7
474,398 - MPMX19_00476 0.18 -0.2
474,398 - MPMX19_00476 0.18 -0.6
474,398 - MPMX19_00476 0.18 -0.9
474,398 - MPMX19_00476 0.18 +0.9
474,398 - MPMX19_00476 0.18 -0.9
474,398 - MPMX19_00476 0.18 -1.3
474,398 - MPMX19_00476 0.18 +0.5
474,398 - MPMX19_00476 0.18 +0.1
474,398 - MPMX19_00476 0.18 -1.9
474,398 - MPMX19_00476 0.18 +0.8
474,398 - MPMX19_00476 0.18 -0.2
474,398 - MPMX19_00476 0.18 -1.6
474,398 - MPMX19_00476 0.18 -1.0
474,398 - MPMX19_00476 0.18 +0.1
474,550 + MPMX19_00476 0.35 -0.0
474,550 + MPMX19_00476 0.35 -1.2
474,550 + MPMX19_00476 0.35 +0.7
474,550 + MPMX19_00476 0.35 +1.3
474,550 + MPMX19_00476 0.35 -1.6
474,550 + MPMX19_00476 0.35 -0.7
474,550 + MPMX19_00476 0.35 +0.3
474,551 - MPMX19_00476 0.35 -0.2
474,551 - MPMX19_00476 0.35 -1.5
474,551 - MPMX19_00476 0.35 -0.8
474,551 - MPMX19_00476 0.35 +0.5
474,551 - MPMX19_00476 0.35 +1.1
474,551 - MPMX19_00476 0.35 +0.4
474,551 - MPMX19_00476 0.35 +0.5
474,551 - MPMX19_00476 0.35 +0.5
474,637 + MPMX19_00476 0.44 +1.3
474,637 + MPMX19_00476 0.44 +0.4
474,637 + MPMX19_00476 0.44 +0.4
474,637 + MPMX19_00476 0.44 -0.1
474,637 + MPMX19_00476 0.44 -0.8
474,637 + MPMX19_00476 0.44 +0.3
474,637 + MPMX19_00476 0.44 -0.5
474,637 + MPMX19_00476 0.44 -0.1
474,637 + MPMX19_00476 0.44 +0.6
474,638 - MPMX19_00476 0.44 -0.4
474,638 - MPMX19_00476 0.44 -1.4
474,638 - MPMX19_00476 0.44 -0.5
474,638 - MPMX19_00476 0.44 +1.1
474,638 - MPMX19_00476 0.44 -0.1
474,638 - MPMX19_00476 0.44 +0.9
474,638 - MPMX19_00476 0.44 -2.7
474,638 - MPMX19_00476 0.44 -0.2
474,688 + MPMX19_00476 0.50 -1.1
474,688 + MPMX19_00476 0.50 -2.1
474,688 + MPMX19_00476 0.50 -0.3
474,688 + MPMX19_00476 0.50 -0.1
474,688 + MPMX19_00476 0.50 +0.3
474,689 - MPMX19_00476 0.50 -1.3
474,689 - MPMX19_00476 0.50 -1.6
474,689 - MPMX19_00476 0.50 -0.1
474,689 - MPMX19_00476 0.50 +0.3
474,689 - MPMX19_00476 0.50 +0.2
474,689 - MPMX19_00476 0.50 +0.7
474,811 + MPMX19_00476 0.63 +0.4
474,811 + MPMX19_00476 0.63 -0.4
474,811 + MPMX19_00476 0.63 -0.5
474,811 + MPMX19_00476 0.63 -0.5
474,811 + MPMX19_00476 0.63 -0.3
474,811 + MPMX19_00476 0.63 -2.6
474,811 + MPMX19_00476 0.63 +0.4
474,811 + MPMX19_00476 0.63 -2.2
474,811 + MPMX19_00476 0.63 +0.7
474,811 + MPMX19_00476 0.63 -0.8
474,812 - MPMX19_00476 0.63 +0.6
474,812 - MPMX19_00476 0.63 -1.2
474,812 - MPMX19_00476 0.63 -0.7
474,812 - MPMX19_00476 0.63 -3.3
474,812 - MPMX19_00476 0.63 +0.3
474,812 - MPMX19_00476 0.63 -0.3
474,812 - MPMX19_00476 0.63 -0.9
474,812 - MPMX19_00476 0.63 -0.3
474,812 - MPMX19_00476 0.63 -0.3
474,812 - MPMX19_00476 0.63 -0.1
475,081 + -0.1
475,081 + +0.9
475,081 + -1.3
475,081 + -1.8
475,081 + +1.1
475,081 + -2.1
475,081 + -0.3
475,081 + -2.6
475,082 - +0.1
475,082 - -2.3
475,082 - +0.6
475,082 - -2.1
475,082 - -0.5
475,082 - +1.5
475,082 - -0.4
475,082 - +0.4
475,154 + -1.0
475,155 - -0.8
475,165 + +0.3
475,165 + -1.0
475,166 - -1.3
475,166 - -1.0
475,845 - MPMX19_00478 0.32 +0.3
475,845 - MPMX19_00478 0.32 -0.7
475,845 - MPMX19_00478 0.32 -1.7
475,845 - MPMX19_00478 0.32 -0.0
475,845 - MPMX19_00478 0.32 +0.3
475,911 - MPMX19_00478 0.60 -0.1
475,911 - MPMX19_00478 0.60 -0.6
476,057 - +1.3
476,057 - +0.9
476,065 - -0.3
476,065 - -0.7
476,065 - +0.6
476,065 - -0.3
476,065 - -0.2
476,065 - +0.4
476,065 - -1.7
476,065 - -0.9
476,065 - -0.8
476,065 - -0.7
476,065 - -1.3
476,065 - +1.3
476,065 - -1.4
476,065 - -0.4
476,065 - -0.2
476,065 - -1.1
476,070 - -0.5
476,070 - -0.3
476,070 - +0.3
476,070 - -0.6
476,070 - -1.0
476,070 - +1.1
476,070 - +0.1
476,070 - -0.5
476,070 - +0.6
476,070 - -0.3
476,070 - -2.2
476,070 - -1.0
476,070 - -0.3
476,070 - +0.5
476,070 - -1.0
476,070 - -0.0
476,070 - -0.4
476,070 - -1.6
476,070 - -0.2

Or see this region's nucleotide sequence