Strain Fitness in Xanthobacter sp. DMC5 around GFF949

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF948 and GFF949 are separated by 173 nucleotidesGFF949 and GFF950 are separated by 12 nucleotides GFF948 - Triosephosphate isomerase, at 1,023,843 to 1,024,592 GFF948 GFF949 - Peptidyl-prolyl cis-trans isomerase D, at 1,024,766 to 1,026,661 GFF949 GFF950 - Anthranilate synthase component 1, at 1,026,674 to 1,028,185 GFF950 Position (kb) 1024 1025 1026 1027Strain fitness (log2 ratio) -1 0 1at 1024.632 kb on + strandat 1024.632 kb on + strandat 1024.644 kb on + strandat 1024.645 kb on - strandat 1024.712 kb on + strandat 1024.713 kb on - strandat 1025.348 kb on + strand, within GFF949at 1025.695 kb on + strand, within GFF949at 1026.227 kb on + strand, within GFF949at 1026.575 kb on + strandat 1026.861 kb on - strand, within GFF950

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,024,632 + -0.2
1,024,632 + -0.9
1,024,644 + -0.6
1,024,645 - +0.4
1,024,712 + +1.5
1,024,713 - -0.5
1,025,348 + GFF949 0.31 -0.9
1,025,695 + GFF949 0.49 -0.2
1,026,227 + GFF949 0.77 +0.7
1,026,575 + +0.7
1,026,861 - GFF950 0.12 -0.7

Or see this region's nucleotide sequence