Strain Fitness in Xanthobacter sp. DMC5 around GFF905

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF903 and GFF904 are separated by 4 nucleotidesGFF904 and GFF905 are separated by 5 nucleotidesGFF905 and GFF906 overlap by 4 nucleotides GFF903 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 972,419 to 973,114 GFF903 GFF904 - Ribose import ATP-binding protein RbsA, at 973,119 to 973,976 GFF904 GFF905 - hypothetical protein, at 973,982 to 975,115 GFF905 GFF906 - hypothetical protein, at 975,112 to 976,770 GFF906 Position (kb) 973 974 975 976Strain fitness (log2 ratio) -2 -1 0 1at 973.084 kb on - strandat 973.086 kb on + strandat 973.086 kb on + strandat 973.087 kb on - strandat 973.087 kb on - strandat 973.087 kb on - strandat 973.087 kb on - strandat 973.132 kb on + strandat 973.132 kb on + strandat 973.132 kb on + strandat 973.132 kb on + strandat 973.133 kb on - strandat 973.133 kb on - strandat 973.840 kb on + strand, within GFF904at 973.840 kb on + strand, within GFF904at 973.841 kb on - strand, within GFF904at 973.841 kb on - strand, within GFF904at 973.945 kb on + strandat 973.946 kb on - strandat 973.946 kb on - strandat 974.298 kb on + strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.356 kb on - strand, within GFF905at 974.356 kb on - strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.428 kb on - strand, within GFF905at 974.428 kb on - strand, within GFF905at 974.460 kb on + strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.564 kb on - strand, within GFF905at 974.644 kb on - strand, within GFF905at 974.644 kb on - strand, within GFF905at 974.775 kb on + strand, within GFF905at 974.775 kb on + strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.818 kb on - strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.916 kb on + strand, within GFF905at 974.955 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.988 kb on + strand, within GFF905at 974.989 kb on - strand, within GFF905at 974.989 kb on - strand, within GFF905at 974.989 kb on - strand, within GFF905at 975.329 kb on + strand, within GFF906at 975.329 kb on + strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.492 kb on - strand, within GFF906at 975.575 kb on + strand, within GFF906at 975.575 kb on + strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.728 kb on + strand, within GFF906at 975.827 kb on + strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.873 kb on - strand, within GFF906at 975.873 kb on - strand, within GFF906at 975.928 kb on + strand, within GFF906at 975.986 kb on + strand, within GFF906at 975.987 kb on - strand, within GFF906at 975.987 kb on - strand, within GFF906

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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973,084 - -0.9
973,086 + +0.7
973,086 + +0.7
973,087 - +0.2
973,087 - +0.6
973,087 - -0.2
973,087 - +0.2
973,132 + -0.7
973,132 + -0.5
973,132 + +0.3
973,132 + -0.5
973,133 - +0.1
973,133 - -0.3
973,840 + GFF904 0.84 -0.9
973,840 + GFF904 0.84 -0.6
973,841 - GFF904 0.84 -1.3
973,841 - GFF904 0.84 -0.3
973,945 + +0.4
973,946 - -1.3
973,946 - +0.3
974,298 + GFF905 0.28 -0.5
974,299 - GFF905 0.28 +0.3
974,299 - GFF905 0.28 +0.6
974,299 - GFF905 0.28 -1.0
974,299 - GFF905 0.28 -0.0
974,355 + GFF905 0.33 +1.3
974,355 + GFF905 0.33 -1.0
974,355 + GFF905 0.33 -0.4
974,355 + GFF905 0.33 -0.8
974,355 + GFF905 0.33 +0.3
974,355 + GFF905 0.33 -0.4
974,355 + GFF905 0.33 +0.3
974,355 + GFF905 0.33 +0.3
974,355 + GFF905 0.33 +0.2
974,356 - GFF905 0.33 -0.3
974,356 - GFF905 0.33 -0.2
974,427 + GFF905 0.39 -0.1
974,427 + GFF905 0.39 +0.4
974,427 + GFF905 0.39 -0.2
974,427 + GFF905 0.39 +0.2
974,428 - GFF905 0.39 -0.8
974,428 - GFF905 0.39 -0.4
974,460 + GFF905 0.42 +0.5
974,461 - GFF905 0.42 +0.2
974,461 - GFF905 0.42 +0.3
974,461 - GFF905 0.42 +0.0
974,461 - GFF905 0.42 -0.1
974,564 - GFF905 0.51 +0.4
974,644 - GFF905 0.58 -0.4
974,644 - GFF905 0.58 +0.7
974,775 + GFF905 0.70 +0.1
974,775 + GFF905 0.70 +0.0
974,776 - GFF905 0.70 +0.2
974,776 - GFF905 0.70 -0.7
974,776 - GFF905 0.70 -0.0
974,776 - GFF905 0.70 +0.1
974,776 - GFF905 0.70 +0.3
974,817 + GFF905 0.74 -2.3
974,817 + GFF905 0.74 -1.3
974,817 + GFF905 0.74 -0.0
974,817 + GFF905 0.74 -0.1
974,818 - GFF905 0.74 +0.8
974,850 + GFF905 0.77 +0.6
974,850 + GFF905 0.77 +0.1
974,850 + GFF905 0.77 +0.9
974,850 + GFF905 0.77 -0.7
974,850 + GFF905 0.77 +0.0
974,850 + GFF905 0.77 +0.6
974,850 + GFF905 0.77 -1.4
974,850 + GFF905 0.77 +0.3
974,850 + GFF905 0.77 +0.6
974,851 - GFF905 0.77 -0.2
974,851 - GFF905 0.77 +0.9
974,851 - GFF905 0.77 +0.1
974,851 - GFF905 0.77 +0.6
974,851 - GFF905 0.77 -0.5
974,851 - GFF905 0.77 +0.3
974,851 - GFF905 0.77 -0.8
974,851 - GFF905 0.77 +0.7
974,916 + GFF905 0.82 +0.0
974,955 + GFF905 0.86 +0.7
974,964 + GFF905 0.87 -0.3
974,964 + GFF905 0.87 -0.3
974,964 + GFF905 0.87 +0.6
974,964 + GFF905 0.87 +0.3
974,964 + GFF905 0.87 -0.4
974,965 - GFF905 0.87 -0.9
974,965 - GFF905 0.87 +0.5
974,965 - GFF905 0.87 -0.1
974,965 - GFF905 0.87 -0.5
974,988 + GFF905 0.89 -0.7
974,989 - GFF905 0.89 -0.4
974,989 - GFF905 0.89 -0.1
974,989 - GFF905 0.89 +0.7
975,329 + GFF906 0.13 -0.2
975,329 + GFF906 0.13 +0.2
975,330 - GFF906 0.13 +0.1
975,330 - GFF906 0.13 +0.1
975,330 - GFF906 0.13 -1.3
975,330 - GFF906 0.13 -0.4
975,330 - GFF906 0.13 -0.3
975,330 - GFF906 0.13 +0.4
975,491 + GFF906 0.23 +0.2
975,491 + GFF906 0.23 +0.6
975,491 + GFF906 0.23 -0.2
975,491 + GFF906 0.23 -0.9
975,492 - GFF906 0.23 +0.7
975,575 + GFF906 0.28 -0.1
975,575 + GFF906 0.28 +0.3
975,576 - GFF906 0.28 +0.3
975,576 - GFF906 0.28 -1.0
975,576 - GFF906 0.28 +0.5
975,576 - GFF906 0.28 +1.0
975,576 - GFF906 0.28 -0.3
975,728 + GFF906 0.37 +0.6
975,827 + GFF906 0.43 -0.3
975,828 - GFF906 0.43 -0.8
975,828 - GFF906 0.43 +0.2
975,828 - GFF906 0.43 +0.1
975,872 + GFF906 0.46 -0.4
975,872 + GFF906 0.46 +0.1
975,872 + GFF906 0.46 +0.3
975,873 - GFF906 0.46 -0.1
975,873 - GFF906 0.46 -0.4
975,928 + GFF906 0.49 +0.2
975,986 + GFF906 0.53 -1.9
975,987 - GFF906 0.53 -0.8
975,987 - GFF906 0.53 +0.0

Or see this region's nucleotide sequence