Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF894 and GFF895 are separated by 226 nucleotides GFF895 and GFF896 are separated by 73 nucleotides GFF896 and GFF897 are separated by 37 nucleotides GFF897 and GFF898 overlap by 4 nucleotides
GFF894 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 964,331 to 965,050
GFF894
GFF895 - hypothetical protein, at 965,277 to 965,846
GFF895
GFF896 - hypothetical protein, at 965,920 to 966,411
GFF896
GFF897 - Urease accessory protein UreG, at 966,449 to 967,072
GFF897
GFF898 - Urease accessory protein UreF, at 967,069 to 968,046
GFF898
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1 at 965.160 kb on - strand at 965.160 kb on - strand at 965.292 kb on + strand at 965.293 kb on - strand at 965.293 kb on - strand at 965.442 kb on - strand, within GFF895 at 965.442 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.458 kb on - strand, within GFF895 at 965.760 kb on + strand, within GFF895 at 965.761 kb on - strand, within GFF895 at 965.761 kb on - strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.777 kb on + strand, within GFF895 at 965.778 kb on - strand, within GFF895 at 965.851 kb on - strand at 966.058 kb on + strand, within GFF896 at 966.058 kb on + strand, within GFF896 at 966.058 kb on + strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.059 kb on - strand, within GFF896 at 966.421 kb on - strand at 966.421 kb on - strand at 966.421 kb on - strand at 966.537 kb on + strand, within GFF897 at 966.537 kb on + strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.703 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.969 kb on + strand, within GFF897 at 966.969 kb on + strand, within GFF897 at 966.970 kb on - strand, within GFF897 at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.091 kb on + strand at 967.091 kb on + strand at 967.091 kb on + strand at 967.158 kb on + strand at 967.158 kb on + strand at 967.159 kb on - strand at 967.159 kb on - strand at 967.159 kb on - strand at 967.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 965,160 - +0.4 965,160 - -0.1 965,292 + +0.6 965,293 - -0.7 965,293 - +0.3 965,442 - GFF895 0.29 -0.7 965,442 - GFF895 0.29 +0.2 965,458 - GFF895 0.32 -0.9 965,458 - GFF895 0.32 -0.4 965,458 - GFF895 0.32 +0.6 965,760 + GFF895 0.85 +0.5 965,761 - GFF895 0.85 -1.8 965,761 - GFF895 0.85 -0.0 965,777 + GFF895 0.88 -0.7 965,777 + GFF895 0.88 -0.2 965,777 + GFF895 0.88 -0.2 965,778 - GFF895 0.88 -0.6 965,851 - +0.4 966,058 + GFF896 0.28 -0.3 966,058 + GFF896 0.28 +0.6 966,058 + GFF896 0.28 +0.4 966,059 - GFF896 0.28 -0.7 966,059 - GFF896 0.28 +0.1 966,059 - GFF896 0.28 -0.1 966,059 - GFF896 0.28 +0.4 966,421 - -1.5 966,421 - +0.5 966,421 - -0.3 966,537 + GFF897 0.14 -0.0 966,537 + GFF897 0.14 +0.2 966,538 - GFF897 0.14 -0.5 966,538 - GFF897 0.14 +0.5 966,702 + GFF897 0.41 -0.2 966,702 + GFF897 0.41 +0.2 966,702 + GFF897 0.41 -0.2 966,702 + GFF897 0.41 +1.1 966,702 + GFF897 0.41 -0.3 966,703 - GFF897 0.41 -1.0 966,940 - GFF897 0.79 +0.1 966,940 - GFF897 0.79 -1.1 966,940 - GFF897 0.79 -1.1 966,940 - GFF897 0.79 -0.2 966,940 - GFF897 0.79 +0.2 966,940 - GFF897 0.79 -0.3 966,940 - GFF897 0.79 +0.1 966,940 - GFF897 0.79 -0.1 966,969 + GFF897 0.83 +0.1 966,969 + GFF897 0.83 -0.2 966,970 - GFF897 0.83 +0.1 967,089 + -0.4 967,089 + -1.2 967,089 + -0.1 967,089 + +0.2 967,089 + +0.3 967,090 - +0.2 967,090 - -0.1 967,090 - +0.5 967,090 - +0.1 967,090 - +0.4 967,090 - -1.2 967,091 + +0.4 967,091 + +0.5 967,091 + -0.7 967,158 + +0.8 967,158 + -0.3 967,159 - +0.9 967,159 - +0.1 967,159 - -1.3 967,159 - +0.3
Or see this region's nucleotide sequence