Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF837 and GFF838 are separated by 186 nucleotides GFF838 and GFF839 are separated by 126 nucleotides GFF839 and GFF840 are separated by 15 nucleotides
GFF837 - hypothetical protein, at 900,958 to 901,821
GFF837
GFF838 - S-adenosyl-L-methionine-binding protein, at 902,008 to 902,472
GFF838
GFF839 - Nucleoside triphosphate pyrophosphohydrolase, at 902,599 to 903,447
GFF839
GFF840 - GTPase HflX, at 903,463 to 904,884
GFF840
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 901.819 kb on + strand at 902.222 kb on + strand, within GFF838 at 902.222 kb on + strand, within GFF838 at 902.378 kb on + strand, within GFF838 at 902.503 kb on - strand at 902.503 kb on - strand at 902.503 kb on - strand at 902.567 kb on + strand at 902.568 kb on - strand at 902.568 kb on - strand at 902.580 kb on + strand at 902.710 kb on + strand, within GFF839 at 902.728 kb on + strand, within GFF839 at 902.729 kb on - strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.270 kb on - strand, within GFF839 at 903.446 kb on - strand at 903.464 kb on + strand at 903.594 kb on - strand at 903.985 kb on + strand, within GFF840 at 904.148 kb on + strand, within GFF840
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 901,819 + +0.4 902,222 + GFF838 0.46 +0.1 902,222 + GFF838 0.46 +0.5 902,378 + GFF838 0.80 -0.3 902,503 - -0.3 902,503 - +0.1 902,503 - +0.4 902,567 + +1.1 902,568 - +0.2 902,568 - -1.8 902,580 + +0.3 902,710 + GFF839 0.13 +0.1 902,728 + GFF839 0.15 -0.9 902,729 - GFF839 0.15 -0.4 903,269 + GFF839 0.79 -0.7 903,269 + GFF839 0.79 +0.3 903,269 + GFF839 0.79 +0.4 903,270 - GFF839 0.79 +0.3 903,446 - -0.1 903,464 + -0.5 903,594 - -2.8 903,985 + GFF840 0.37 +0.2 904,148 + GFF840 0.48 -1.0
Or see this region's nucleotide sequence