Strain Fitness in Xanthobacter sp. DMC5 around GFF740

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF739 and GFF740 are separated by 9 nucleotidesGFF740 and GFF741 are separated by 12 nucleotides GFF739 - Carbon monoxide dehydrogenase large chain, at 785,345 to 787,723 GFF739 GFF740 - Carbon monoxide dehydrogenase medium chain, at 787,733 to 788,533 GFF740 GFF741 - putative cyclic di-GMP phosphodiesterase PdeB, at 788,546 to 790,021 GFF741 Position (kb) 787 788 789Strain fitness (log2 ratio) -2 -1 0 1at 786.737 kb on + strand, within GFF739at 786.737 kb on + strand, within GFF739at 786.737 kb on + strand, within GFF739at 786.738 kb on - strand, within GFF739at 786.739 kb on + strand, within GFF739at 786.739 kb on + strand, within GFF739at 786.740 kb on - strand, within GFF739at 786.989 kb on + strand, within GFF739at 786.990 kb on - strand, within GFF739at 786.990 kb on - strand, within GFF739at 786.990 kb on - strand, within GFF739at 787.181 kb on + strand, within GFF739at 787.181 kb on + strand, within GFF739at 787.182 kb on - strand, within GFF739at 787.182 kb on - strand, within GFF739at 787.182 kb on - strand, within GFF739at 787.182 kb on - strand, within GFF739at 787.182 kb on - strand, within GFF739at 787.241 kb on + strand, within GFF739at 787.242 kb on - strand, within GFF739at 787.242 kb on - strand, within GFF739at 787.442 kb on + strand, within GFF739at 787.442 kb on + strand, within GFF739at 787.442 kb on + strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.476 kb on - strand, within GFF739at 787.484 kb on + strand, within GFF739at 787.485 kb on - strand, within GFF739at 787.485 kb on - strand, within GFF739at 787.736 kb on + strandat 787.736 kb on + strandat 787.736 kb on + strandat 787.736 kb on + strandat 787.736 kb on + strandat 787.737 kb on - strandat 787.737 kb on - strandat 788.096 kb on + strand, within GFF740at 788.165 kb on + strand, within GFF740at 788.166 kb on - strand, within GFF740at 788.250 kb on - strand, within GFF740at 788.279 kb on + strand, within GFF740at 788.279 kb on + strand, within GFF740at 788.279 kb on + strand, within GFF740at 788.279 kb on + strand, within GFF740at 788.279 kb on + strand, within GFF740at 788.604 kb on + strandat 788.647 kb on - strandat 788.647 kb on - strandat 788.719 kb on + strand, within GFF741at 788.719 kb on + strand, within GFF741at 788.719 kb on + strand, within GFF741at 788.719 kb on + strand, within GFF741at 788.720 kb on - strand, within GFF741at 788.720 kb on - strand, within GFF741at 788.720 kb on - strand, within GFF741at 788.721 kb on + strand, within GFF741at 788.721 kb on + strand, within GFF741at 788.722 kb on - strand, within GFF741at 788.752 kb on + strand, within GFF741at 788.814 kb on + strand, within GFF741at 788.814 kb on + strand, within GFF741at 788.815 kb on - strand, within GFF741at 788.815 kb on - strand, within GFF741at 788.830 kb on - strand, within GFF741at 788.942 kb on + strand, within GFF741at 788.943 kb on - strand, within GFF741at 788.943 kb on - strand, within GFF741at 788.943 kb on - strand, within GFF741at 789.155 kb on - strand, within GFF741at 789.249 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.519 kb on + strand, within GFF741at 789.520 kb on - strand, within GFF741

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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786,737 + GFF739 0.59 +0.5
786,737 + GFF739 0.59 +0.1
786,737 + GFF739 0.59 -0.3
786,738 - GFF739 0.59 -0.3
786,739 + GFF739 0.59 -0.0
786,739 + GFF739 0.59 +0.1
786,740 - GFF739 0.59 -0.2
786,989 + GFF739 0.69 -0.4
786,990 - GFF739 0.69 -0.3
786,990 - GFF739 0.69 +0.8
786,990 - GFF739 0.69 -0.3
787,181 + GFF739 0.77 -0.3
787,181 + GFF739 0.77 +0.3
787,182 - GFF739 0.77 +0.4
787,182 - GFF739 0.77 +1.6
787,182 - GFF739 0.77 -0.1
787,182 - GFF739 0.77 -0.5
787,182 - GFF739 0.77 -0.4
787,241 + GFF739 0.80 +0.8
787,242 - GFF739 0.80 +0.3
787,242 - GFF739 0.80 +0.6
787,442 + GFF739 0.88 -0.5
787,442 + GFF739 0.88 -0.4
787,442 + GFF739 0.88 -0.1
787,476 - GFF739 0.90 +0.1
787,476 - GFF739 0.90 -0.8
787,476 - GFF739 0.90 -1.1
787,476 - GFF739 0.90 -0.4
787,476 - GFF739 0.90 -0.7
787,476 - GFF739 0.90 -1.9
787,484 + GFF739 0.90 +0.5
787,485 - GFF739 0.90 +0.4
787,485 - GFF739 0.90 +0.5
787,736 + +0.4
787,736 + +0.0
787,736 + +0.9
787,736 + -1.9
787,736 + +0.3
787,737 - +0.8
787,737 - +1.0
788,096 + GFF740 0.45 +0.6
788,165 + GFF740 0.54 +0.5
788,166 - GFF740 0.54 +0.4
788,250 - GFF740 0.65 +0.5
788,279 + GFF740 0.68 +0.4
788,279 + GFF740 0.68 -1.1
788,279 + GFF740 0.68 +0.4
788,279 + GFF740 0.68 +0.0
788,279 + GFF740 0.68 +0.3
788,604 + -0.8
788,647 - +0.3
788,647 - -0.1
788,719 + GFF741 0.12 -1.1
788,719 + GFF741 0.12 -0.2
788,719 + GFF741 0.12 -0.5
788,719 + GFF741 0.12 -0.1
788,720 - GFF741 0.12 -0.4
788,720 - GFF741 0.12 -1.3
788,720 - GFF741 0.12 -1.4
788,721 + GFF741 0.12 +0.3
788,721 + GFF741 0.12 -0.0
788,722 - GFF741 0.12 +0.8
788,752 + GFF741 0.14 +0.8
788,814 + GFF741 0.18 +0.9
788,814 + GFF741 0.18 +0.1
788,815 - GFF741 0.18 +0.5
788,815 - GFF741 0.18 +0.1
788,830 - GFF741 0.19 -0.2
788,942 + GFF741 0.27 +0.4
788,943 - GFF741 0.27 +0.0
788,943 - GFF741 0.27 -0.1
788,943 - GFF741 0.27 +0.5
789,155 - GFF741 0.41 -0.1
789,249 + GFF741 0.48 -1.3
789,519 + GFF741 0.66 -0.2
789,519 + GFF741 0.66 -0.0
789,519 + GFF741 0.66 -0.4
789,519 + GFF741 0.66 +0.5
789,519 + GFF741 0.66 -0.4
789,519 + GFF741 0.66 -0.2
789,520 - GFF741 0.66 +0.5

Or see this region's nucleotide sequence