Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF706 and GFF707 are separated by 1 nucleotides GFF707 and GFF708 are separated by 81 nucleotides GFF708 and GFF709 are separated by 190 nucleotides GFF709 and GFF710 are separated by 176 nucleotides
GFF706 - 50S ribosomal protein L13, at 754,198 to 754,659
GFF706
GFF707 - 30S ribosomal protein S9, at 754,661 to 755,140
GFF707
GFF708 - hypothetical protein, at 755,222 to 755,572
GFF708
GFF709 - hypothetical protein, at 755,763 to 756,095
GFF709
GFF710 - hypothetical protein, at 756,272 to 757,069
GFF710
Position (kb) 755
756 Strain fitness (log2 ratio) -2
-1
0
1
2 at 755.394 kb on + strand, within GFF708 at 755.394 kb on + strand, within GFF708 at 755.418 kb on + strand, within GFF708 at 755.418 kb on + strand, within GFF708 at 755.553 kb on + strand at 755.553 kb on + strand at 755.554 kb on - strand at 755.554 kb on - strand at 755.554 kb on - strand at 755.554 kb on - strand at 755.554 kb on - strand at 755.650 kb on + strand at 755.650 kb on + strand at 755.651 kb on - strand at 755.869 kb on + strand, within GFF709 at 755.870 kb on - strand, within GFF709 at 755.938 kb on + strand, within GFF709 at 755.939 kb on - strand, within GFF709 at 756.470 kb on + strand, within GFF710 at 756.471 kb on - strand, within GFF710 at 756.567 kb on - strand, within GFF710
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 755,394 + GFF708 0.49 -0.1 755,394 + GFF708 0.49 +1.3 755,418 + GFF708 0.56 -1.4 755,418 + GFF708 0.56 +1.3 755,553 + -0.0 755,553 + -0.4 755,554 - -0.1 755,554 - -2.3 755,554 - +0.0 755,554 - +0.1 755,554 - -0.8 755,650 + +0.1 755,650 + +1.8 755,651 - +0.8 755,869 + GFF709 0.32 +0.2 755,870 - GFF709 0.32 -0.1 755,938 + GFF709 0.53 -0.9 755,939 - GFF709 0.53 -1.0 756,470 + GFF710 0.25 +0.6 756,471 - GFF710 0.25 -0.1 756,567 - GFF710 0.37 -0.4
Or see this region's nucleotide sequence