Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF698 and GFF699 are separated by 97 nucleotides GFF699 and GFF700 overlap by 14 nucleotides GFF700 and GFF701 overlap by 4 nucleotides
GFF698 - HTH-type transcriptional regulator CynR, at 747,402 to 748,301
GFF698
GFF699 - Holin-like protein CidA, at 748,399 to 748,839
GFF699
GFF700 - Inner membrane protein YohK, at 748,826 to 749,521
GFF700
GFF701 - Heme A synthase, at 749,518 to 750,594
GFF701
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1 at 748.362 kb on + strand at 748.437 kb on + strand at 748.716 kb on + strand, within GFF699 at 748.716 kb on + strand, within GFF699 at 748.717 kb on - strand, within GFF699 at 748.837 kb on + strand at 748.837 kb on + strand at 748.886 kb on + strand at 748.886 kb on + strand at 748.886 kb on + strand at 749.072 kb on + strand, within GFF700 at 749.072 kb on + strand, within GFF700 at 749.072 kb on + strand, within GFF700 at 749.073 kb on - strand, within GFF700 at 749.073 kb on - strand, within GFF700 at 749.099 kb on + strand, within GFF700 at 749.771 kb on + strand, within GFF701 at 749.900 kb on + strand, within GFF701 at 749.901 kb on - strand, within GFF701 at 750.096 kb on - strand, within GFF701 at 750.096 kb on - strand, within GFF701 at 750.302 kb on + strand, within GFF701 at 750.303 kb on - strand, within GFF701 at 750.518 kb on + strand at 750.518 kb on + strand at 750.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 748,362 + -1.2 748,437 + -1.6 748,716 + GFF699 0.72 -0.9 748,716 + GFF699 0.72 -1.7 748,717 - GFF699 0.72 +0.1 748,837 + -0.9 748,837 + +0.3 748,886 + +0.3 748,886 + +0.1 748,886 + +0.0 749,072 + GFF700 0.35 +0.8 749,072 + GFF700 0.35 -0.8 749,072 + GFF700 0.35 +0.1 749,073 - GFF700 0.35 -0.2 749,073 - GFF700 0.35 -0.1 749,099 + GFF700 0.39 -0.4 749,771 + GFF701 0.23 -0.9 749,900 + GFF701 0.35 -1.1 749,901 - GFF701 0.36 -0.6 750,096 - GFF701 0.54 -0.2 750,096 - GFF701 0.54 +1.1 750,302 + GFF701 0.73 -0.3 750,303 - GFF701 0.73 +0.1 750,518 + +0.3 750,518 + -1.1 750,519 - -2.2
Or see this region's nucleotide sequence