Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF678 and GFF679 are separated by 17 nucleotides GFF679 and GFF680 overlap by 4 nucleotides GFF680 and GFF681 are separated by 176 nucleotides
GFF678 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 727,980 to 728,885
GFF678
GFF679 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 728,903 to 729,532
GFF679
GFF680 - Putative L-lactate dehydrogenase operon regulatory protein, at 729,529 to 730,311
GFF680
GFF681 - L-lactate permease, at 730,488 to 732,194
GFF681
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 729.404 kb on + strand, within GFF679 at 729.710 kb on + strand, within GFF680 at 729.711 kb on - strand, within GFF680 at 729.711 kb on - strand, within GFF680 at 729.727 kb on - strand, within GFF680 at 729.727 kb on - strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.728 kb on + strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 729.729 kb on - strand, within GFF680 at 730.381 kb on + strand at 730.381 kb on + strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.407 kb on - strand at 730.514 kb on - strand at 730.527 kb on - strand at 730.873 kb on + strand, within GFF681 at 730.873 kb on + strand, within GFF681 at 730.874 kb on - strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.915 kb on + strand, within GFF681 at 730.916 kb on - strand, within GFF681 at 730.916 kb on - strand, within GFF681 at 730.951 kb on - strand, within GFF681 at 731.054 kb on - strand, within GFF681 at 731.130 kb on + strand, within GFF681 at 731.264 kb on - strand, within GFF681 at 731.264 kb on - strand, within GFF681
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 729,404 + GFF679 0.80 +0.3 729,710 + GFF680 0.23 -0.6 729,711 - GFF680 0.23 -0.7 729,711 - GFF680 0.23 +0.4 729,727 - GFF680 0.25 +1.4 729,727 - GFF680 0.25 -0.4 729,728 + GFF680 0.25 -0.6 729,728 + GFF680 0.25 -0.3 729,728 + GFF680 0.25 -0.7 729,728 + GFF680 0.25 +0.6 729,728 + GFF680 0.25 -1.1 729,729 - GFF680 0.26 +0.1 729,729 - GFF680 0.26 +1.2 729,729 - GFF680 0.26 +0.5 729,729 - GFF680 0.26 +0.4 729,729 - GFF680 0.26 +0.7 730,381 + +0.1 730,381 + -1.2 730,382 - -0.5 730,382 - -0.1 730,382 - -1.0 730,407 - +0.0 730,514 - +1.0 730,527 - +0.4 730,873 + GFF681 0.23 -0.3 730,873 + GFF681 0.23 +0.6 730,874 - GFF681 0.23 -0.4 730,915 + GFF681 0.25 +0.3 730,915 + GFF681 0.25 -0.2 730,915 + GFF681 0.25 -0.1 730,916 - GFF681 0.25 -0.4 730,916 - GFF681 0.25 -2.4 730,951 - GFF681 0.27 -0.1 731,054 - GFF681 0.33 -0.8 731,130 + GFF681 0.38 -1.2 731,264 - GFF681 0.45 -1.1 731,264 - GFF681 0.45 +0.5
Or see this region's nucleotide sequence