Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF566 and GFF567 are separated by 46 nucleotides GFF567 and GFF568 are separated by 248 nucleotides GFF568 and GFF569 are separated by 398 nucleotides GFF569 and GFF570 are separated by 107 nucleotides
GFF566 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 606,423 to 607,511
GFF566
GFF567 - hypothetical protein, at 607,558 to 608,160
GFF567
GFF568 - hypothetical protein, at 608,409 to 608,687
GFF568
GFF569 - 10 kDa chaperonin 1, at 609,086 to 609,400
GFF569
GFF570 - 60 kDa chaperonin 5, at 609,508 to 611,139
GFF570
Position (kb) 608
609 Strain fitness (log2 ratio) -1
0
1 at 607.583 kb on + strand at 607.584 kb on - strand at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.614 kb on + strand, within GFF568 at 608.615 kb on - strand, within GFF568 at 608.615 kb on - strand, within GFF568 at 608.641 kb on + strand, within GFF568 at 608.932 kb on + strand at 608.933 kb on - strand at 609.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 607,583 + +0.7 607,584 - +1.1 608,564 - GFF568 0.56 -0.1 608,564 - GFF568 0.56 +0.7 608,564 - GFF568 0.56 -0.1 608,564 - GFF568 0.56 +0.0 608,614 + GFF568 0.73 -1.2 608,615 - GFF568 0.74 +0.2 608,615 - GFF568 0.74 +0.4 608,641 + GFF568 0.83 -0.5 608,932 + +0.3 608,933 - +0.8 609,536 + -0.1
Or see this region's nucleotide sequence