Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF516 and GFF517 are separated by 153 nucleotides GFF517 and GFF518 are separated by 10 nucleotides
GFF516 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 550,596 to 552,386
GFF516
GFF517 - putative 3-hydroxyacyl-CoA dehydrogenase, at 552,540 to 554,870
GFF517
GFF518 - 3-ketoacyl-CoA thiolase, at 554,881 to 556,038
GFF518
Position (kb) 552
553
554
555 Strain fitness (log2 ratio) -1
0
1
2
3 at 551.825 kb on - strand, within GFF516 at 551.968 kb on + strand, within GFF516 at 551.968 kb on + strand, within GFF516 at 551.969 kb on - strand, within GFF516 at 551.969 kb on - strand, within GFF516 at 552.091 kb on + strand, within GFF516 at 552.092 kb on - strand, within GFF516 at 552.188 kb on - strand, within GFF516 at 552.376 kb on + strand at 552.376 kb on + strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.377 kb on - strand at 552.833 kb on - strand, within GFF517 at 553.106 kb on - strand, within GFF517 at 553.106 kb on - strand, within GFF517 at 553.207 kb on + strand, within GFF517 at 553.208 kb on - strand, within GFF517 at 553.208 kb on - strand, within GFF517 at 553.208 kb on - strand, within GFF517 at 553.208 kb on - strand, within GFF517 at 553.222 kb on + strand, within GFF517 at 553.335 kb on - strand, within GFF517 at 553.355 kb on - strand, within GFF517 at 553.460 kb on + strand, within GFF517 at 553.461 kb on - strand, within GFF517 at 553.558 kb on + strand, within GFF517 at 553.559 kb on - strand, within GFF517 at 553.559 kb on - strand, within GFF517 at 553.559 kb on - strand, within GFF517 at 553.579 kb on + strand, within GFF517 at 553.730 kb on + strand, within GFF517 at 553.872 kb on + strand, within GFF517 at 553.872 kb on + strand, within GFF517 at 553.873 kb on - strand, within GFF517 at 553.873 kb on - strand, within GFF517 at 553.930 kb on + strand, within GFF517 at 553.930 kb on + strand, within GFF517 at 553.931 kb on - strand, within GFF517 at 553.993 kb on + strand, within GFF517 at 554.267 kb on - strand, within GFF517 at 554.267 kb on - strand, within GFF517 at 554.267 kb on - strand, within GFF517 at 554.470 kb on - strand, within GFF517 at 554.945 kb on + strand at 554.945 kb on + strand at 554.946 kb on - strand at 555.272 kb on + strand, within GFF518 at 555.272 kb on + strand, within GFF518 at 555.273 kb on - strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.597 kb on - strand, within GFF518 at 555.597 kb on - strand, within GFF518 at 555.617 kb on + strand, within GFF518 at 555.617 kb on + strand, within GFF518 at 555.618 kb on - strand, within GFF518 at 555.618 kb on - strand, within GFF518 at 555.618 kb on - strand, within GFF518
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 551,825 - GFF516 0.69 +2.1 551,968 + GFF516 0.77 +2.2 551,968 + GFF516 0.77 +2.4 551,969 - GFF516 0.77 +2.3 551,969 - GFF516 0.77 +2.1 552,091 + GFF516 0.83 +2.9 552,092 - GFF516 0.84 +1.8 552,188 - GFF516 0.89 +1.9 552,376 + +1.1 552,376 + +2.4 552,377 - +2.4 552,377 - +1.6 552,377 - +1.4 552,377 - +2.6 552,377 - +1.6 552,377 - +0.9 552,377 - +1.3 552,833 - GFF517 0.13 +2.3 553,106 - GFF517 0.24 +0.3 553,106 - GFF517 0.24 +0.9 553,207 + GFF517 0.29 +2.1 553,208 - GFF517 0.29 +1.3 553,208 - GFF517 0.29 +1.8 553,208 - GFF517 0.29 +1.0 553,208 - GFF517 0.29 +0.6 553,222 + GFF517 0.29 +2.0 553,335 - GFF517 0.34 +0.7 553,355 - GFF517 0.35 +1.6 553,460 + GFF517 0.39 +1.7 553,461 - GFF517 0.40 +1.4 553,558 + GFF517 0.44 +2.0 553,559 - GFF517 0.44 +2.1 553,559 - GFF517 0.44 +1.3 553,559 - GFF517 0.44 +1.6 553,579 + GFF517 0.45 +2.8 553,730 + GFF517 0.51 +1.9 553,872 + GFF517 0.57 +2.0 553,872 + GFF517 0.57 +1.3 553,873 - GFF517 0.57 +1.9 553,873 - GFF517 0.57 +1.7 553,930 + GFF517 0.60 +1.8 553,930 + GFF517 0.60 +1.8 553,931 - GFF517 0.60 +1.8 553,993 + GFF517 0.62 +2.3 554,267 - GFF517 0.74 +0.4 554,267 - GFF517 0.74 +2.1 554,267 - GFF517 0.74 +2.1 554,470 - GFF517 0.83 +2.1 554,945 + +1.2 554,945 + +2.8 554,946 - +1.7 555,272 + GFF518 0.34 +2.6 555,272 + GFF518 0.34 +1.8 555,273 - GFF518 0.34 +1.2 555,596 + GFF518 0.62 +1.8 555,596 + GFF518 0.62 +2.3 555,596 + GFF518 0.62 +2.6 555,596 + GFF518 0.62 +2.0 555,597 - GFF518 0.62 +2.5 555,597 - GFF518 0.62 +0.5 555,617 + GFF518 0.64 +2.5 555,617 + GFF518 0.64 +1.8 555,618 - GFF518 0.64 +0.4 555,618 - GFF518 0.64 +1.3 555,618 - GFF518 0.64 +2.2
Or see this region's nucleotide sequence