Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF503 and GFF504 overlap by 1 nucleotides GFF504 and GFF505 are separated by 41 nucleotides GFF505 and GFF506 are separated by 46 nucleotides GFF506 and GFF507 are separated by 10 nucleotides
GFF503 - Hercynine oxygenase, at 534,394 to 535,704
GFF503
GFF504 - Histidine N-alpha-methyltransferase, at 535,704 to 536,675
GFF504
GFF505 - hypothetical protein, at 536,717 to 536,959
GFF505
GFF506 - hypothetical protein, at 537,006 to 537,233
GFF506
GFF507 - hypothetical protein, at 537,244 to 537,531
GFF507
Position (kb) 535
536
537 Strain fitness (log2 ratio) -1
0
1
2 at 534.766 kb on + strand, within GFF503 at 534.767 kb on - strand, within GFF503 at 534.767 kb on - strand, within GFF503 at 534.940 kb on + strand, within GFF503 at 534.997 kb on + strand, within GFF503 at 534.998 kb on - strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.046 kb on - strand, within GFF503 at 535.207 kb on + strand, within GFF503 at 535.207 kb on + strand, within GFF503 at 535.208 kb on - strand, within GFF503 at 535.223 kb on - strand, within GFF503 at 535.312 kb on + strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.315 kb on + strand, within GFF503 at 535.316 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.556 kb on - strand, within GFF503 at 535.636 kb on + strand at 535.636 kb on + strand at 535.637 kb on - strand at 535.637 kb on - strand at 535.651 kb on + strand at 535.652 kb on - strand at 535.879 kb on - strand, within GFF504 at 535.881 kb on + strand, within GFF504 at 536.032 kb on - strand, within GFF504 at 536.032 kb on - strand, within GFF504 at 536.094 kb on + strand, within GFF504 at 536.328 kb on + strand, within GFF504 at 536.360 kb on - strand, within GFF504 at 536.559 kb on + strand, within GFF504 at 536.560 kb on - strand, within GFF504 at 536.566 kb on - strand, within GFF504 at 536.705 kb on + strand at 536.705 kb on + strand at 536.705 kb on + strand at 536.706 kb on - strand at 537.003 kb on + strand at 537.003 kb on + strand at 537.005 kb on + strand at 537.005 kb on + strand at 537.330 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.504 kb on - strand at 537.504 kb on - strand at 537.538 kb on - strand at 537.601 kb on - strand at 537.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 534,766 + GFF503 0.28 +0.0 534,767 - GFF503 0.28 -0.4 534,767 - GFF503 0.28 +0.2 534,940 + GFF503 0.42 -0.3 534,997 + GFF503 0.46 -0.6 534,998 - GFF503 0.46 -0.4 535,045 + GFF503 0.50 +0.2 535,045 + GFF503 0.50 +0.3 535,045 + GFF503 0.50 +0.3 535,046 - GFF503 0.50 +1.6 535,207 + GFF503 0.62 +0.6 535,207 + GFF503 0.62 +0.1 535,208 - GFF503 0.62 +0.2 535,223 - GFF503 0.63 -0.6 535,312 + GFF503 0.70 +1.2 535,313 - GFF503 0.70 -0.0 535,313 - GFF503 0.70 -0.3 535,313 - GFF503 0.70 +0.5 535,313 - GFF503 0.70 +0.4 535,313 - GFF503 0.70 -0.2 535,315 + GFF503 0.70 +0.1 535,316 - GFF503 0.70 +0.5 535,508 - GFF503 0.85 -1.1 535,508 - GFF503 0.85 -0.5 535,508 - GFF503 0.85 +0.1 535,556 - GFF503 0.89 +0.3 535,636 + +1.2 535,636 + -0.0 535,637 - -0.2 535,637 - +0.6 535,651 + -0.4 535,652 - +0.1 535,879 - GFF504 0.18 -0.1 535,881 + GFF504 0.18 +0.2 536,032 - GFF504 0.34 -0.5 536,032 - GFF504 0.34 +0.1 536,094 + GFF504 0.40 +0.0 536,328 + GFF504 0.64 +0.8 536,360 - GFF504 0.67 -0.5 536,559 + GFF504 0.88 +2.2 536,560 - GFF504 0.88 +0.4 536,566 - GFF504 0.89 -0.9 536,705 + +0.3 536,705 + +0.2 536,705 + -0.4 536,706 - +0.1 537,003 + -0.1 537,003 + -0.0 537,005 + +0.7 537,005 + -1.3 537,330 - GFF507 0.30 -1.0 537,375 - GFF507 0.45 +0.2 537,375 - GFF507 0.45 -0.4 537,375 - GFF507 0.45 +0.5 537,504 - -0.2 537,504 - -0.6 537,538 - +0.1 537,601 - +0.3 537,610 - -0.3
Or see this region's nucleotide sequence