Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF500 and GFF501 are separated by 101 nucleotides GFF501 and GFF502 are separated by 72 nucleotides
GFF500 - Phthalate 4,5-dioxygenase oxygenase reductase subunit, at 531,122 to 532,081
GFF500
GFF501 - Nitronate monooxygenase, at 532,183 to 533,343
GFF501
GFF502 - HTH-type transcriptional regulator GltR, at 533,416 to 534,240
GFF502
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 531.339 kb on - strand, within GFF500 at 531.339 kb on - strand, within GFF500 at 531.494 kb on + strand, within GFF500 at 531.494 kb on + strand, within GFF500 at 531.495 kb on - strand, within GFF500 at 531.579 kb on + strand, within GFF500 at 531.579 kb on + strand, within GFF500 at 531.579 kb on + strand, within GFF500 at 531.579 kb on + strand, within GFF500 at 531.579 kb on + strand, within GFF500 at 531.580 kb on - strand, within GFF500 at 531.580 kb on - strand, within GFF500 at 531.583 kb on - strand, within GFF500 at 531.658 kb on - strand, within GFF500 at 531.658 kb on - strand, within GFF500 at 531.882 kb on + strand, within GFF500 at 531.883 kb on - strand, within GFF500 at 531.919 kb on - strand, within GFF500 at 532.820 kb on - strand, within GFF501 at 532.901 kb on - strand, within GFF501 at 532.990 kb on - strand, within GFF501 at 532.991 kb on + strand, within GFF501 at 532.991 kb on + strand, within GFF501 at 532.991 kb on + strand, within GFF501 at 532.991 kb on + strand, within GFF501 at 532.991 kb on + strand, within GFF501 at 532.992 kb on - strand, within GFF501 at 532.994 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.138 kb on + strand, within GFF501 at 533.139 kb on - strand, within GFF501 at 533.139 kb on - strand, within GFF501 at 533.139 kb on - strand, within GFF501 at 533.139 kb on - strand, within GFF501 at 533.345 kb on - strand at 533.617 kb on + strand, within GFF502 at 534.324 kb on + strand at 534.325 kb on - strand at 534.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 531,339 - GFF500 0.23 -0.1 531,339 - GFF500 0.23 +1.5 531,494 + GFF500 0.39 -0.3 531,494 + GFF500 0.39 -0.7 531,495 - GFF500 0.39 -0.5 531,579 + GFF500 0.48 +1.3 531,579 + GFF500 0.48 -0.5 531,579 + GFF500 0.48 -0.4 531,579 + GFF500 0.48 +1.3 531,579 + GFF500 0.48 -0.1 531,580 - GFF500 0.48 +0.9 531,580 - GFF500 0.48 +1.0 531,583 - GFF500 0.48 +1.1 531,658 - GFF500 0.56 -0.0 531,658 - GFF500 0.56 +0.6 531,882 + GFF500 0.79 +0.7 531,883 - GFF500 0.79 -0.0 531,919 - GFF500 0.83 -0.4 532,820 - GFF501 0.55 -0.2 532,901 - GFF501 0.62 +0.1 532,990 - GFF501 0.70 +0.2 532,991 + GFF501 0.70 +0.3 532,991 + GFF501 0.70 +0.8 532,991 + GFF501 0.70 +0.8 532,991 + GFF501 0.70 -0.4 532,991 + GFF501 0.70 -0.8 532,992 - GFF501 0.70 -0.4 532,994 + GFF501 0.70 +0.1 533,138 + GFF501 0.82 -1.5 533,138 + GFF501 0.82 -0.6 533,138 + GFF501 0.82 +1.0 533,138 + GFF501 0.82 +0.2 533,138 + GFF501 0.82 -0.8 533,138 + GFF501 0.82 -0.5 533,138 + GFF501 0.82 -0.6 533,138 + GFF501 0.82 +0.9 533,139 - GFF501 0.82 +1.0 533,139 - GFF501 0.82 -0.1 533,139 - GFF501 0.82 -0.2 533,139 - GFF501 0.82 +0.3 533,345 - -1.3 533,617 + GFF502 0.24 -0.8 534,324 + +0.1 534,325 - +1.4 534,325 - +0.6
Or see this region's nucleotide sequence