Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4911 and GFF4912 are separated by 53 nucleotides GFF4912 and GFF4913 are separated by 11 nucleotides GFF4913 and GFF4914 are separated by 8 nucleotides
GFF4911 - Multicopper oxidase MmcO, at 14,923 to 16,479
GFF4911
GFF4912 - hypothetical protein, at 16,533 to 16,907
GFF4912
GFF4913 - Cobalt-zinc-cadmium resistance protein CzcA, at 16,919 to 20,050
GFF4913
GFF4914 - hypothetical protein, at 20,059 to 21,699
GFF4914
Position (kb) 16
17
18
19
20
21 Strain fitness (log2 ratio) -1
0
1 at 16.080 kb on + strand, within GFF4911 at 16.081 kb on - strand, within GFF4911 at 16.081 kb on - strand, within GFF4911 at 16.467 kb on + strand at 16.467 kb on + strand at 16.468 kb on - strand at 16.468 kb on - strand at 16.537 kb on + strand at 16.537 kb on + strand at 16.537 kb on + strand at 16.538 kb on - strand at 16.744 kb on + strand, within GFF4912 at 16.789 kb on + strand, within GFF4912 at 16.789 kb on + strand, within GFF4912 at 17.004 kb on + strand at 17.422 kb on - strand, within GFF4913 at 17.431 kb on - strand, within GFF4913 at 17.898 kb on + strand, within GFF4913 at 17.899 kb on - strand, within GFF4913 at 18.091 kb on + strand, within GFF4913 at 18.185 kb on + strand, within GFF4913 at 18.354 kb on + strand, within GFF4913 at 18.567 kb on + strand, within GFF4913 at 18.568 kb on - strand, within GFF4913 at 18.629 kb on - strand, within GFF4913 at 19.225 kb on + strand, within GFF4913 at 19.225 kb on + strand, within GFF4913 at 19.225 kb on + strand, within GFF4913 at 19.225 kb on + strand, within GFF4913 at 19.225 kb on + strand, within GFF4913 at 19.226 kb on - strand, within GFF4913 at 19.226 kb on - strand, within GFF4913 at 19.226 kb on - strand, within GFF4913 at 19.226 kb on - strand, within GFF4913 at 19.227 kb on + strand, within GFF4913 at 19.227 kb on + strand, within GFF4913 at 19.228 kb on - strand, within GFF4913 at 19.461 kb on + strand, within GFF4913 at 19.461 kb on + strand, within GFF4913 at 19.462 kb on - strand, within GFF4913 at 19.770 kb on + strand at 19.770 kb on + strand at 19.966 kb on - strand at 19.974 kb on + strand at 20.375 kb on - strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 16,080 + GFF4911 0.74 -0.2 16,081 - GFF4911 0.74 +0.1 16,081 - GFF4911 0.74 +1.4 16,467 + -0.5 16,467 + +0.7 16,468 - +0.3 16,468 - +0.6 16,537 + -0.1 16,537 + +0.2 16,537 + -0.0 16,538 - +0.8 16,744 + GFF4912 0.56 +0.4 16,789 + GFF4912 0.68 -0.4 16,789 + GFF4912 0.68 +0.7 17,004 + -0.3 17,422 - GFF4913 0.16 -0.4 17,431 - GFF4913 0.16 +1.4 17,898 + GFF4913 0.31 +0.2 17,899 - GFF4913 0.31 +0.6 18,091 + GFF4913 0.37 +1.5 18,185 + GFF4913 0.40 -0.7 18,354 + GFF4913 0.46 -0.7 18,567 + GFF4913 0.53 -0.2 18,568 - GFF4913 0.53 -0.1 18,629 - GFF4913 0.55 +0.9 19,225 + GFF4913 0.74 -1.0 19,225 + GFF4913 0.74 -0.1 19,225 + GFF4913 0.74 +0.5 19,225 + GFF4913 0.74 +0.2 19,225 + GFF4913 0.74 -0.1 19,226 - GFF4913 0.74 -0.3 19,226 - GFF4913 0.74 +0.2 19,226 - GFF4913 0.74 +0.1 19,226 - GFF4913 0.74 +0.8 19,227 + GFF4913 0.74 +0.3 19,227 + GFF4913 0.74 +0.7 19,228 - GFF4913 0.74 +0.4 19,461 + GFF4913 0.81 -0.4 19,461 + GFF4913 0.81 -0.5 19,462 - GFF4913 0.81 +1.1 19,770 + +1.6 19,770 + +0.8 19,966 - +0.3 19,974 + -0.1 20,375 - GFF4914 0.19 +0.4 20,801 + GFF4914 0.45 +0.9 20,801 + GFF4914 0.45 +0.1 20,801 + GFF4914 0.45 +0.2 20,801 + GFF4914 0.45 -0.6 20,801 + GFF4914 0.45 -0.1 20,802 - GFF4914 0.45 -1.2 20,802 - GFF4914 0.45 -0.5 20,802 - GFF4914 0.45 -0.9 20,802 - GFF4914 0.45 -1.1
Or see this region's nucleotide sequence