Strain Fitness in Xanthobacter sp. DMC5 around GFF4880

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4878 and GFF4879 are separated by 57 nucleotidesGFF4879 and GFF4880 are separated by 73 nucleotidesGFF4880 and GFF4881 are separated by 187 nucleotidesGFF4881 and GFF4882 are separated by 45 nucleotides GFF4878 - hypothetical protein, at 26,321 to 27,295 GFF4878 GFF4879 - hypothetical protein, at 27,353 to 27,835 GFF4879 GFF4880 - hypothetical protein, at 27,909 to 28,304 GFF4880 GFF4881 - hypothetical protein, at 28,492 to 28,971 GFF4881 GFF4882 - hypothetical protein, at 29,017 to 29,349 GFF4882 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 27.036 kb on - strand, within GFF4878at 27.293 kb on + strandat 27.294 kb on - strandat 27.294 kb on - strandat 27.346 kb on + strandat 27.346 kb on + strandat 27.347 kb on - strandat 27.381 kb on - strandat 27.514 kb on - strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.548 kb on + strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.549 kb on - strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.650 kb on + strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.651 kb on - strand, within GFF4879at 27.690 kb on - strand, within GFF4879at 27.690 kb on - strand, within GFF4879at 27.793 kb on - strandat 27.867 kb on + strandat 27.867 kb on + strandat 27.867 kb on + strandat 27.868 kb on - strandat 27.868 kb on - strandat 27.873 kb on - strandat 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.071 kb on + strand, within GFF4880at 28.072 kb on - strand, within GFF4880at 28.072 kb on - strand, within GFF4880at 28.383 kb on + strandat 28.384 kb on - strandat 28.681 kb on + strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 28.682 kb on - strand, within GFF4881at 29.012 kb on + strandat 29.012 kb on + strandat 29.012 kb on + strandat 29.012 kb on + strandat 29.013 kb on - strandat 29.013 kb on - strandat 29.013 kb on - strandat 29.076 kb on + strand, within GFF4882at 29.076 kb on + strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.077 kb on - strand, within GFF4882at 29.078 kb on + strand, within GFF4882at 29.078 kb on + strand, within GFF4882at 29.079 kb on - strand, within GFF4882at 29.079 kb on - strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.083 kb on + strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.084 kb on - strand, within GFF4882at 29.212 kb on + strand, within GFF4882at 29.213 kb on - strand, within GFF4882at 29.239 kb on + strand, within GFF4882at 29.245 kb on + strand, within GFF4882at 29.245 kb on + strand, within GFF4882

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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27,036 - GFF4878 0.73 -0.2
27,293 + -0.3
27,294 - +0.2
27,294 - +0.6
27,346 + +0.4
27,346 + -1.4
27,347 - +0.2
27,381 - +1.1
27,514 - GFF4879 0.33 -0.4
27,548 + GFF4879 0.40 -1.0
27,548 + GFF4879 0.40 +0.1
27,548 + GFF4879 0.40 -0.7
27,548 + GFF4879 0.40 +0.8
27,548 + GFF4879 0.40 +0.8
27,549 - GFF4879 0.41 -0.6
27,549 - GFF4879 0.41 +1.0
27,549 - GFF4879 0.41 +0.8
27,549 - GFF4879 0.41 +0.3
27,549 - GFF4879 0.41 +0.3
27,650 + GFF4879 0.61 +1.0
27,650 + GFF4879 0.61 +0.8
27,650 + GFF4879 0.61 -0.2
27,650 + GFF4879 0.61 +0.1
27,650 + GFF4879 0.61 -0.2
27,651 - GFF4879 0.62 -0.5
27,651 - GFF4879 0.62 +1.1
27,651 - GFF4879 0.62 +0.1
27,690 - GFF4879 0.70 -0.5
27,690 - GFF4879 0.70 +0.3
27,793 - +0.2
27,867 + -0.5
27,867 + -0.1
27,867 + -0.4
27,868 - +0.1
27,868 - -0.2
27,873 - -0.4
28,071 + GFF4880 0.41 +0.6
28,071 + GFF4880 0.41 -0.5
28,071 + GFF4880 0.41 -0.5
28,072 - GFF4880 0.41 +0.7
28,072 - GFF4880 0.41 +0.0
28,383 + -0.3
28,384 - +0.4
28,681 + GFF4881 0.39 +0.7
28,682 - GFF4881 0.40 -0.3
28,682 - GFF4881 0.40 +0.2
28,682 - GFF4881 0.40 +0.7
29,012 + -0.1
29,012 + -1.6
29,012 + -1.0
29,012 + -1.4
29,013 - -0.2
29,013 - +1.0
29,013 - -2.5
29,076 + GFF4882 0.18 +1.4
29,076 + GFF4882 0.18 +0.8
29,077 - GFF4882 0.18 +1.3
29,077 - GFF4882 0.18 -0.9
29,077 - GFF4882 0.18 +0.7
29,078 + GFF4882 0.18 -0.6
29,078 + GFF4882 0.18 -1.1
29,079 - GFF4882 0.19 -0.3
29,079 - GFF4882 0.19 -0.6
29,083 + GFF4882 0.20 +0.0
29,083 + GFF4882 0.20 +0.2
29,083 + GFF4882 0.20 -0.4
29,083 + GFF4882 0.20 -0.4
29,083 + GFF4882 0.20 +0.9
29,083 + GFF4882 0.20 -0.6
29,084 - GFF4882 0.20 -0.2
29,084 - GFF4882 0.20 -0.9
29,084 - GFF4882 0.20 -0.7
29,084 - GFF4882 0.20 -0.1
29,084 - GFF4882 0.20 +0.4
29,212 + GFF4882 0.59 -1.3
29,213 - GFF4882 0.59 -2.2
29,239 + GFF4882 0.67 -0.9
29,245 + GFF4882 0.68 -0.3
29,245 + GFF4882 0.68 -0.1

Or see this region's nucleotide sequence