Strain Fitness in Xanthobacter sp. DMC5 around GFF4790

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4789 and GFF4790 are separated by 17 nucleotidesGFF4790 and GFF4791 overlap by 4 nucleotides GFF4789 - hypothetical protein, at 29,902 to 31,284 GFF4789 GFF4790 - High-affinity branched-chain amino acid transport system permease protein LivH, at 31,302 to 32,177 GFF4790 GFF4791 - Vitamin B12 import ATP-binding protein BtuD, at 32,174 to 33,982 GFF4791 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1 2at 30.465 kb on + strand, within GFF4789at 30.466 kb on - strand, within GFF4789at 30.490 kb on + strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.491 kb on - strand, within GFF4789at 30.542 kb on - strand, within GFF4789at 30.542 kb on - strand, within GFF4789at 30.565 kb on - strand, within GFF4789at 30.565 kb on - strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.598 kb on + strand, within GFF4789at 30.599 kb on - strand, within GFF4789at 30.599 kb on - strand, within GFF4789at 30.688 kb on + strand, within GFF4789at 30.689 kb on - strand, within GFF4789at 30.770 kb on - strand, within GFF4789at 30.770 kb on - strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.771 kb on + strand, within GFF4789at 30.797 kb on - strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.826 kb on + strand, within GFF4789at 30.827 kb on - strand, within GFF4789at 30.923 kb on - strand, within GFF4789at 30.967 kb on + strand, within GFF4789at 30.968 kb on - strand, within GFF4789at 30.968 kb on - strand, within GFF4789at 31.015 kb on + strand, within GFF4789at 31.015 kb on + strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.016 kb on - strand, within GFF4789at 31.087 kb on + strand, within GFF4789at 31.202 kb on + strandat 31.203 kb on - strandat 31.359 kb on + strandat 31.359 kb on + strandat 31.360 kb on - strandat 31.360 kb on - strandat 31.445 kb on + strand, within GFF4790at 31.445 kb on + strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.446 kb on - strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.449 kb on + strand, within GFF4790at 31.450 kb on - strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.491 kb on + strand, within GFF4790at 31.546 kb on - strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.861 kb on + strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.862 kb on - strand, within GFF4790at 31.879 kb on + strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.880 kb on - strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.928 kb on + strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.929 kb on - strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.968 kb on + strand, within GFF4790at 31.969 kb on - strand, within GFF4790at 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.109 kb on + strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.110 kb on - strandat 32.169 kb on + strandat 32.270 kb on + strandat 32.270 kb on + strandat 32.271 kb on - strandat 32.405 kb on + strand, within GFF4791at 32.406 kb on - strand, within GFF4791at 32.406 kb on - strand, within GFF4791at 32.492 kb on + strand, within GFF4791at 32.493 kb on - strand, within GFF4791at 32.516 kb on - strand, within GFF4791at 32.516 kb on - strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.555 kb on + strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.556 kb on - strand, within GFF4791at 32.669 kb on + strand, within GFF4791at 32.669 kb on + strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.670 kb on - strand, within GFF4791at 32.726 kb on + strand, within GFF4791at 32.726 kb on + strand, within GFF4791at 32.727 kb on - strand, within GFF4791at 32.747 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.927 kb on + strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 32.928 kb on - strand, within GFF4791at 33.014 kb on + strand, within GFF4791at 33.014 kb on + strand, within GFF4791at 33.015 kb on - strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.068 kb on + strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.069 kb on - strand, within GFF4791at 33.074 kb on - strand, within GFF4791

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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30,465 + GFF4789 0.41 -1.3
30,466 - GFF4789 0.41 -1.3
30,490 + GFF4789 0.43 +0.6
30,491 - GFF4789 0.43 -0.4
30,491 - GFF4789 0.43 -0.8
30,491 - GFF4789 0.43 +0.3
30,542 - GFF4789 0.46 +0.4
30,542 - GFF4789 0.46 +0.0
30,565 - GFF4789 0.48 +0.4
30,565 - GFF4789 0.48 +0.7
30,598 + GFF4789 0.50 -0.1
30,598 + GFF4789 0.50 +0.9
30,598 + GFF4789 0.50 +0.0
30,599 - GFF4789 0.50 +0.1
30,599 - GFF4789 0.50 -0.9
30,688 + GFF4789 0.57 -0.5
30,689 - GFF4789 0.57 +0.3
30,770 - GFF4789 0.63 +2.0
30,770 - GFF4789 0.63 +1.3
30,771 + GFF4789 0.63 -0.7
30,771 + GFF4789 0.63 +0.0
30,771 + GFF4789 0.63 -0.9
30,771 + GFF4789 0.63 +0.2
30,797 - GFF4789 0.65 -1.0
30,826 + GFF4789 0.67 -0.7
30,826 + GFF4789 0.67 -0.5
30,826 + GFF4789 0.67 -0.6
30,826 + GFF4789 0.67 +0.8
30,827 - GFF4789 0.67 +0.3
30,923 - GFF4789 0.74 +0.9
30,967 + GFF4789 0.77 +0.9
30,968 - GFF4789 0.77 -0.5
30,968 - GFF4789 0.77 +0.9
31,015 + GFF4789 0.80 -0.6
31,015 + GFF4789 0.80 +0.3
31,016 - GFF4789 0.81 +0.6
31,016 - GFF4789 0.81 -0.0
31,016 - GFF4789 0.81 -0.1
31,087 + GFF4789 0.86 +0.0
31,202 + -0.7
31,203 - +0.1
31,359 + -0.7
31,359 + -0.5
31,360 - +0.9
31,360 - +0.1
31,445 + GFF4790 0.16 -0.5
31,445 + GFF4790 0.16 -0.2
31,446 - GFF4790 0.16 -0.0
31,446 - GFF4790 0.16 +0.3
31,446 - GFF4790 0.16 +0.8
31,446 - GFF4790 0.16 +1.8
31,449 + GFF4790 0.17 -0.1
31,449 + GFF4790 0.17 +0.1
31,450 - GFF4790 0.17 +0.2
31,491 + GFF4790 0.22 -0.3
31,491 + GFF4790 0.22 +0.1
31,546 - GFF4790 0.28 -0.3
31,861 + GFF4790 0.64 +0.1
31,861 + GFF4790 0.64 +0.5
31,862 - GFF4790 0.64 -0.4
31,862 - GFF4790 0.64 +0.3
31,862 - GFF4790 0.64 -0.9
31,862 - GFF4790 0.64 -0.4
31,879 + GFF4790 0.66 +0.2
31,880 - GFF4790 0.66 -1.5
31,880 - GFF4790 0.66 -0.2
31,928 + GFF4790 0.71 -0.8
31,928 + GFF4790 0.71 -0.9
31,928 + GFF4790 0.71 -0.8
31,929 - GFF4790 0.72 +0.0
31,929 - GFF4790 0.72 -0.1
31,968 + GFF4790 0.76 +0.1
31,968 + GFF4790 0.76 -0.2
31,968 + GFF4790 0.76 +0.4
31,969 - GFF4790 0.76 -0.2
32,109 + -0.5
32,109 + -0.1
32,109 + +1.1
32,109 + +0.9
32,109 + +0.2
32,109 + -0.3
32,109 + -0.3
32,109 + +0.1
32,110 - -1.4
32,110 - -0.3
32,110 - -1.5
32,110 - +0.4
32,169 + +0.7
32,270 + -0.2
32,270 + -0.3
32,271 - +0.5
32,405 + GFF4791 0.13 +0.8
32,406 - GFF4791 0.13 -0.4
32,406 - GFF4791 0.13 -0.1
32,492 + GFF4791 0.18 -1.0
32,493 - GFF4791 0.18 +0.4
32,516 - GFF4791 0.19 +0.2
32,516 - GFF4791 0.19 +1.1
32,555 + GFF4791 0.21 +1.1
32,555 + GFF4791 0.21 +0.2
32,555 + GFF4791 0.21 -0.6
32,556 - GFF4791 0.21 +1.6
32,556 - GFF4791 0.21 -0.7
32,556 - GFF4791 0.21 -0.2
32,556 - GFF4791 0.21 -0.4
32,669 + GFF4791 0.27 -0.8
32,669 + GFF4791 0.27 +0.5
32,670 - GFF4791 0.27 +0.4
32,670 - GFF4791 0.27 +0.4
32,670 - GFF4791 0.27 +0.6
32,670 - GFF4791 0.27 -0.3
32,670 - GFF4791 0.27 -0.3
32,670 - GFF4791 0.27 +1.5
32,726 + GFF4791 0.31 -0.7
32,726 + GFF4791 0.31 +0.4
32,727 - GFF4791 0.31 +0.5
32,747 + GFF4791 0.32 -0.5
32,927 + GFF4791 0.42 +0.2
32,927 + GFF4791 0.42 -0.0
32,927 + GFF4791 0.42 -0.2
32,928 - GFF4791 0.42 +0.1
32,928 - GFF4791 0.42 -0.8
32,928 - GFF4791 0.42 +0.2
32,928 - GFF4791 0.42 +0.2
32,928 - GFF4791 0.42 +0.4
32,928 - GFF4791 0.42 -0.1
33,014 + GFF4791 0.46 +0.2
33,014 + GFF4791 0.46 +0.8
33,015 - GFF4791 0.46 -0.2
33,068 + GFF4791 0.49 +0.2
33,068 + GFF4791 0.49 -0.6
33,069 - GFF4791 0.49 -0.2
33,069 - GFF4791 0.49 -0.3
33,069 - GFF4791 0.49 -0.8
33,074 - GFF4791 0.50 +0.3

Or see this region's nucleotide sequence