Strain Fitness in Xanthobacter sp. DMC5 around GFF4765

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4764 and GFF4765 are separated by 197 nucleotidesGFF4765 and GFF4766 are separated by 447 nucleotides GFF4764 - hypothetical protein, at 1,324 to 2,331 GFF4764 GFF4765 - hypothetical protein, at 2,529 to 2,846 GFF4765 GFF4766 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,294 to 4,079 GFF4766 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.569 kb on - strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.602 kb on + strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.603 kb on - strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.689 kb on + strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.690 kb on - strand, within GFF4764at 1.751 kb on + strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.752 kb on - strand, within GFF4764at 1.847 kb on + strand, within GFF4764at 1.880 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.960 kb on + strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 1.961 kb on - strand, within GFF4764at 2.083 kb on + strand, within GFF4764at 2.150 kb on + strand, within GFF4764at 2.151 kb on - strand, within GFF4764at 2.151 kb on - strand, within GFF4764at 2.565 kb on + strand, within GFF4765at 2.565 kb on + strand, within GFF4765at 2.565 kb on + strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.566 kb on - strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.567 kb on + strand, within GFF4765at 2.568 kb on - strand, within GFF4765at 2.568 kb on - strand, within GFF4765at 2.742 kb on + strand, within GFF4765at 2.743 kb on - strand, within GFF4765at 2.982 kb on + strandat 2.982 kb on + strandat 3.373 kb on + strand, within GFF4766at 3.374 kb on - strand, within GFF4766at 3.577 kb on + strand, within GFF4766at 3.577 kb on + strand, within GFF4766at 3.578 kb on - strand, within GFF4766at 3.592 kb on + strand, within GFF4766at 3.593 kb on - strand, within GFF4766at 3.593 kb on - strand, within GFF4766at 3.593 kb on - strand, within GFF4766

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,569 - GFF4764 0.24 +0.8
1,602 + GFF4764 0.28 -0.0
1,602 + GFF4764 0.28 +0.5
1,602 + GFF4764 0.28 +0.3
1,602 + GFF4764 0.28 +1.5
1,603 - GFF4764 0.28 -0.5
1,603 - GFF4764 0.28 +0.3
1,603 - GFF4764 0.28 +0.4
1,603 - GFF4764 0.28 -1.0
1,689 + GFF4764 0.36 -0.4
1,689 + GFF4764 0.36 +0.5
1,689 + GFF4764 0.36 -0.2
1,690 - GFF4764 0.36 -0.0
1,690 - GFF4764 0.36 +0.3
1,751 + GFF4764 0.42 -0.4
1,752 - GFF4764 0.42 -0.3
1,752 - GFF4764 0.42 -0.4
1,847 + GFF4764 0.52 +0.4
1,880 + GFF4764 0.55 +0.3
1,960 + GFF4764 0.63 +0.5
1,960 + GFF4764 0.63 +0.0
1,960 + GFF4764 0.63 -0.1
1,960 + GFF4764 0.63 +1.2
1,960 + GFF4764 0.63 +0.3
1,961 - GFF4764 0.63 -0.0
1,961 - GFF4764 0.63 -0.5
2,083 + GFF4764 0.75 +0.4
2,150 + GFF4764 0.82 +1.2
2,151 - GFF4764 0.82 -2.6
2,151 - GFF4764 0.82 -0.5
2,565 + GFF4765 0.11 +0.0
2,565 + GFF4765 0.11 +0.1
2,565 + GFF4765 0.11 +0.2
2,566 - GFF4765 0.12 +0.1
2,566 - GFF4765 0.12 -1.0
2,566 - GFF4765 0.12 -0.1
2,566 - GFF4765 0.12 +0.3
2,566 - GFF4765 0.12 -0.6
2,567 + GFF4765 0.12 +0.1
2,567 + GFF4765 0.12 -1.4
2,567 + GFF4765 0.12 +0.5
2,568 - GFF4765 0.12 +0.2
2,568 - GFF4765 0.12 -0.3
2,742 + GFF4765 0.67 +1.4
2,743 - GFF4765 0.67 -0.6
2,982 + -0.2
2,982 + -0.2
3,373 + GFF4766 0.10 +0.5
3,374 - GFF4766 0.10 -0.0
3,577 + GFF4766 0.36 +0.2
3,577 + GFF4766 0.36 +0.1
3,578 - GFF4766 0.36 -0.1
3,592 + GFF4766 0.38 +0.0
3,593 - GFF4766 0.38 +0.3
3,593 - GFF4766 0.38 +0.2
3,593 - GFF4766 0.38 -0.4

Or see this region's nucleotide sequence