Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4752 and GFF4753 are separated by 17 nucleotides GFF4753 and GFF4754 are separated by 85 nucleotides GFF4754 and GFF4755 are separated by 14 nucleotides GFF4755 and GFF4756 are separated by 10 nucleotides
GFF4752 - hypothetical protein, at 166,515 to 166,850
GFF4752
GFF4753 - hypothetical protein, at 166,868 to 167,332
GFF4753
GFF4754 - hypothetical protein, at 167,418 to 168,296
GFF4754
GFF4755 - Inner membrane ABC transporter permease protein YdcV, at 168,311 to 169,114
GFF4755
GFF4756 - Putrescine transport system permease protein PotH, at 169,125 to 169,982
GFF4756
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1 at 166.495 kb on + strand at 166.655 kb on - strand, within GFF4752 at 166.738 kb on + strand, within GFF4752 at 166.813 kb on + strand, within GFF4752 at 166.813 kb on + strand, within GFF4752 at 166.813 kb on + strand, within GFF4752 at 166.814 kb on - strand, within GFF4752 at 166.814 kb on - strand, within GFF4752 at 167.336 kb on - strand at 167.336 kb on - strand at 167.431 kb on + strand at 167.432 kb on - strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.440 kb on + strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.441 kb on - strand at 167.525 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.564 kb on - strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.590 kb on + strand, within GFF4754 at 167.591 kb on - strand, within GFF4754 at 167.591 kb on - strand, within GFF4754 at 167.655 kb on - strand, within GFF4754 at 167.936 kb on - strand, within GFF4754 at 167.953 kb on + strand, within GFF4754 at 167.953 kb on + strand, within GFF4754 at 168.441 kb on + strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.442 kb on - strand, within GFF4755 at 168.685 kb on + strand, within GFF4755 at 168.686 kb on - strand, within GFF4755 at 168.952 kb on - strand, within GFF4755 at 168.952 kb on - strand, within GFF4755 at 168.966 kb on + strand, within GFF4755 at 168.966 kb on + strand, within GFF4755 at 169.132 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 166,495 + +0.5 166,655 - GFF4752 0.42 -0.8 166,738 + GFF4752 0.66 -0.8 166,813 + GFF4752 0.89 +0.4 166,813 + GFF4752 0.89 -0.2 166,813 + GFF4752 0.89 -2.1 166,814 - GFF4752 0.89 -1.1 166,814 - GFF4752 0.89 +0.2 167,336 - -0.6 167,336 - -0.7 167,431 + -0.0 167,432 - +0.4 167,440 + +0.6 167,440 + +0.2 167,440 + -0.4 167,440 + -0.9 167,441 - -0.7 167,441 - -0.8 167,441 - -0.6 167,441 - -0.0 167,525 - GFF4754 0.12 +0.9 167,564 - GFF4754 0.17 +0.7 167,564 - GFF4754 0.17 +0.5 167,564 - GFF4754 0.17 -0.2 167,590 + GFF4754 0.20 +0.1 167,590 + GFF4754 0.20 -0.2 167,590 + GFF4754 0.20 +1.3 167,590 + GFF4754 0.20 +1.7 167,591 - GFF4754 0.20 -0.3 167,591 - GFF4754 0.20 -0.0 167,655 - GFF4754 0.27 +1.2 167,936 - GFF4754 0.59 +0.4 167,953 + GFF4754 0.61 -0.2 167,953 + GFF4754 0.61 -0.8 168,441 + GFF4755 0.16 -0.1 168,442 - GFF4755 0.16 +1.2 168,442 - GFF4755 0.16 +0.1 168,442 - GFF4755 0.16 +0.0 168,442 - GFF4755 0.16 +0.5 168,685 + GFF4755 0.47 +0.5 168,686 - GFF4755 0.47 +0.5 168,952 - GFF4755 0.80 +0.2 168,952 - GFF4755 0.80 +1.5 168,966 + GFF4755 0.81 +0.8 168,966 + GFF4755 0.81 -0.3 169,132 + +0.1
Or see this region's nucleotide sequence