Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF474 and GFF475 are separated by 290 nucleotides GFF475 and GFF476 are separated by 39 nucleotides
GFF474 - HTH-type transcriptional repressor NagR, at 500,513 to 501,334
GFF474
GFF475 - hypothetical protein, at 501,625 to 502,173
GFF475
GFF476 - hypothetical protein, at 502,213 to 503,421
GFF476
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 500.655 kb on + strand, within GFF474 at 500.703 kb on + strand, within GFF474 at 500.703 kb on + strand, within GFF474 at 500.703 kb on + strand, within GFF474 at 500.703 kb on + strand, within GFF474 at 500.704 kb on - strand, within GFF474 at 500.704 kb on - strand, within GFF474 at 500.704 kb on - strand, within GFF474 at 500.704 kb on - strand, within GFF474 at 500.844 kb on + strand, within GFF474 at 500.845 kb on - strand, within GFF474 at 500.851 kb on - strand, within GFF474 at 501.212 kb on - strand, within GFF474 at 501.212 kb on - strand, within GFF474 at 501.212 kb on - strand, within GFF474 at 501.212 kb on - strand, within GFF474 at 501.249 kb on + strand, within GFF474 at 501.249 kb on + strand, within GFF474 at 501.250 kb on - strand, within GFF474 at 501.399 kb on - strand at 501.627 kb on - strand at 501.627 kb on - strand at 501.627 kb on - strand at 501.765 kb on + strand, within GFF475 at 501.932 kb on + strand, within GFF475 at 501.933 kb on - strand, within GFF475 at 501.933 kb on - strand, within GFF475 at 501.970 kb on + strand, within GFF475 at 502.016 kb on + strand, within GFF475 at 502.016 kb on + strand, within GFF475 at 502.016 kb on + strand, within GFF475 at 502.016 kb on + strand, within GFF475 at 502.040 kb on + strand, within GFF475 at 502.040 kb on + strand, within GFF475 at 502.040 kb on + strand, within GFF475 at 502.040 kb on + strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.041 kb on - strand, within GFF475 at 502.292 kb on + strand at 502.292 kb on + strand at 502.292 kb on + strand at 502.292 kb on + strand at 502.292 kb on + strand at 502.292 kb on + strand at 502.293 kb on - strand at 502.293 kb on - strand at 502.293 kb on - strand at 502.293 kb on - strand at 502.293 kb on - strand at 502.296 kb on - strand at 502.343 kb on + strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.344 kb on - strand, within GFF476 at 502.481 kb on + strand, within GFF476 at 502.482 kb on - strand, within GFF476 at 502.482 kb on - strand, within GFF476 at 502.592 kb on + strand, within GFF476 at 502.593 kb on - strand, within GFF476 at 502.593 kb on - strand, within GFF476 at 502.658 kb on + strand, within GFF476 at 502.666 kb on + strand, within GFF476 at 502.908 kb on - strand, within GFF476 at 503.007 kb on + strand, within GFF476
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 500,655 + GFF474 0.17 +0.1 500,703 + GFF474 0.23 +1.1 500,703 + GFF474 0.23 -0.8 500,703 + GFF474 0.23 +0.2 500,703 + GFF474 0.23 -0.5 500,704 - GFF474 0.23 +0.7 500,704 - GFF474 0.23 -0.5 500,704 - GFF474 0.23 -0.8 500,704 - GFF474 0.23 -0.1 500,844 + GFF474 0.40 -0.1 500,845 - GFF474 0.40 -1.3 500,851 - GFF474 0.41 +0.6 501,212 - GFF474 0.85 +0.2 501,212 - GFF474 0.85 +1.0 501,212 - GFF474 0.85 -0.6 501,212 - GFF474 0.85 -1.3 501,249 + GFF474 0.90 -1.1 501,249 + GFF474 0.90 +0.2 501,250 - GFF474 0.90 +1.7 501,399 - -0.5 501,627 - +0.5 501,627 - +1.1 501,627 - -0.1 501,765 + GFF475 0.26 -0.4 501,932 + GFF475 0.56 +0.4 501,933 - GFF475 0.56 -0.2 501,933 - GFF475 0.56 +0.0 501,970 + GFF475 0.63 +0.6 502,016 + GFF475 0.71 +1.1 502,016 + GFF475 0.71 -0.1 502,016 + GFF475 0.71 +0.4 502,016 + GFF475 0.71 -0.2 502,040 + GFF475 0.76 -1.3 502,040 + GFF475 0.76 +1.1 502,040 + GFF475 0.76 -0.1 502,040 + GFF475 0.76 +0.5 502,041 - GFF475 0.76 +0.5 502,041 - GFF475 0.76 +0.4 502,041 - GFF475 0.76 -0.3 502,041 - GFF475 0.76 -0.3 502,041 - GFF475 0.76 +1.3 502,041 - GFF475 0.76 +0.7 502,292 + -0.3 502,292 + +0.7 502,292 + -0.3 502,292 + +1.3 502,292 + -0.5 502,292 + -0.2 502,293 - +0.8 502,293 - +0.9 502,293 - +0.3 502,293 - -0.0 502,293 - -0.1 502,296 - +0.5 502,343 + GFF476 0.11 +0.6 502,344 - GFF476 0.11 -0.2 502,344 - GFF476 0.11 +0.6 502,344 - GFF476 0.11 -0.3 502,344 - GFF476 0.11 +0.0 502,344 - GFF476 0.11 -0.2 502,344 - GFF476 0.11 -0.2 502,481 + GFF476 0.22 -0.2 502,482 - GFF476 0.22 -0.2 502,482 - GFF476 0.22 -0.3 502,592 + GFF476 0.31 -0.8 502,593 - GFF476 0.31 -0.7 502,593 - GFF476 0.31 +0.5 502,658 + GFF476 0.37 +1.0 502,666 + GFF476 0.37 -0.7 502,908 - GFF476 0.57 +0.1 503,007 + GFF476 0.66 -2.0
Or see this region's nucleotide sequence