Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4747 and GFF4748 are separated by 297 nucleotides GFF4748 and GFF4749 are separated by 19 nucleotides GFF4749 and GFF4750 are separated by 5 nucleotides GFF4750 and GFF4751 overlap by 1 nucleotides
GFF4747 - hypothetical protein, at 162,211 to 163,230
GFF4747
GFF4748 - Enolase-phosphatase E1, at 163,528 to 164,205
GFF4748
GFF4749 - Chloroacetanilide N-alkylformylase 2, ferredoxin component, at 164,225 to 164,554
GFF4749
GFF4750 - hypothetical protein, at 164,560 to 165,045
GFF4750
GFF4751 - hypothetical protein, at 165,045 to 166,334
GFF4751
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1 at 162.531 kb on - strand, within GFF4747 at 163.098 kb on - strand, within GFF4747 at 163.449 kb on - strand at 163.449 kb on - strand at 163.535 kb on + strand at 163.536 kb on - strand at 163.536 kb on - strand at 163.536 kb on - strand at 163.536 kb on - strand at 163.607 kb on - strand, within GFF4748 at 163.798 kb on - strand, within GFF4748 at 163.813 kb on + strand, within GFF4748 at 163.813 kb on + strand, within GFF4748 at 163.814 kb on - strand, within GFF4748 at 164.023 kb on + strand, within GFF4748 at 164.024 kb on - strand, within GFF4748 at 164.026 kb on + strand, within GFF4748 at 164.523 kb on + strand at 164.524 kb on - strand at 164.675 kb on + strand, within GFF4750 at 164.676 kb on - strand, within GFF4750 at 164.676 kb on - strand, within GFF4750 at 164.676 kb on - strand, within GFF4750 at 164.780 kb on + strand, within GFF4750 at 164.781 kb on - strand, within GFF4750 at 164.781 kb on - strand, within GFF4750 at 165.038 kb on + strand at 165.166 kb on + strand at 165.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 162,531 - GFF4747 0.31 +0.2 163,098 - GFF4747 0.87 -0.9 163,449 - +0.2 163,449 - -0.6 163,535 + -0.1 163,536 - +0.0 163,536 - -0.4 163,536 - -0.3 163,536 - -0.7 163,607 - GFF4748 0.12 -0.3 163,798 - GFF4748 0.40 +0.3 163,813 + GFF4748 0.42 +0.6 163,813 + GFF4748 0.42 +0.6 163,814 - GFF4748 0.42 -0.4 164,023 + GFF4748 0.73 +1.1 164,024 - GFF4748 0.73 -0.6 164,026 + GFF4748 0.73 +0.3 164,523 + +0.3 164,524 - -0.3 164,675 + GFF4750 0.24 -0.2 164,676 - GFF4750 0.24 +0.6 164,676 - GFF4750 0.24 -0.6 164,676 - GFF4750 0.24 -0.1 164,780 + GFF4750 0.45 -0.6 164,781 - GFF4750 0.45 -0.4 164,781 - GFF4750 0.45 +1.7 165,038 + +0.5 165,166 + -0.8 165,166 + -0.0
Or see this region's nucleotide sequence