Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4741 and GFF4742 are separated by 214 nucleotides GFF4742 and GFF4743 are separated by 4 nucleotides GFF4743 and GFF4744 are separated by 12 nucleotides
GFF4741 - hypothetical protein, at 156,491 to 157,183
GFF4741
GFF4742 - Hexuronate transporter, at 157,398 to 158,669
GFF4742
GFF4743 - hypothetical protein, at 158,674 to 158,871
GFF4743
GFF4744 - Tn3 family transposase TnXax1, at 158,884 to 160,137
GFF4744
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.398 kb on + strand at 156.467 kb on + strand at 156.764 kb on + strand, within GFF4741 at 156.764 kb on + strand, within GFF4741 at 156.764 kb on + strand, within GFF4741 at 156.765 kb on + strand, within GFF4741 at 156.765 kb on - strand, within GFF4741 at 156.765 kb on - strand, within GFF4741 at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.462 kb on - strand at 157.486 kb on - strand at 157.541 kb on + strand, within GFF4742 at 157.609 kb on - strand, within GFF4742 at 157.609 kb on - strand, within GFF4742 at 157.698 kb on + strand, within GFF4742 at 157.699 kb on - strand, within GFF4742 at 157.699 kb on - strand, within GFF4742 at 157.807 kb on - strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 158.100 kb on + strand, within GFF4742 at 158.124 kb on + strand, within GFF4742 at 158.136 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.161 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742 at 158.311 kb on - strand, within GFF4742 at 158.439 kb on + strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.440 kb on - strand, within GFF4742 at 158.799 kb on + strand, within GFF4743 at 158.834 kb on + strand, within GFF4743 at 158.834 kb on + strand, within GFF4743 at 159.153 kb on - strand, within GFF4744 at 159.153 kb on - strand, within GFF4744 at 159.171 kb on - strand, within GFF4744 at 159.171 kb on - strand, within GFF4744 at 159.188 kb on + strand, within GFF4744 at 159.189 kb on - strand, within GFF4744 at 159.189 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.219 kb on - strand, within GFF4744 at 159.377 kb on + strand, within GFF4744 at 159.378 kb on - strand, within GFF4744 at 159.378 kb on - strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.506 kb on + strand, within GFF4744 at 159.507 kb on - strand, within GFF4744 at 159.647 kb on + strand, within GFF4744
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 156,398 + -1.3 156,467 + +1.8 156,764 + GFF4741 0.39 -0.4 156,764 + GFF4741 0.39 +0.1 156,764 + GFF4741 0.39 +0.2 156,765 + GFF4741 0.40 -0.6 156,765 - GFF4741 0.40 -0.0 156,765 - GFF4741 0.40 -0.2 157,461 + -0.4 157,461 + +0.1 157,461 + -0.2 157,461 + -0.8 157,461 + -0.0 157,461 + -0.2 157,462 - +0.4 157,486 - +0.1 157,541 + GFF4742 0.11 +0.5 157,609 - GFF4742 0.17 -1.1 157,609 - GFF4742 0.17 -0.5 157,698 + GFF4742 0.24 +0.3 157,699 - GFF4742 0.24 +0.0 157,699 - GFF4742 0.24 +0.1 157,807 - GFF4742 0.32 +0.7 157,938 + GFF4742 0.42 -1.1 157,938 + GFF4742 0.42 +0.1 157,938 + GFF4742 0.42 -0.3 157,939 - GFF4742 0.43 +0.0 157,939 - GFF4742 0.43 +0.6 157,939 - GFF4742 0.43 -0.1 158,100 + GFF4742 0.55 -0.8 158,124 + GFF4742 0.57 -0.9 158,136 + GFF4742 0.58 -2.0 158,160 + GFF4742 0.60 -0.0 158,160 + GFF4742 0.60 +0.9 158,161 - GFF4742 0.60 +0.1 158,176 - GFF4742 0.61 -0.3 158,176 - GFF4742 0.61 +0.2 158,311 - GFF4742 0.72 +0.2 158,439 + GFF4742 0.82 +0.4 158,440 - GFF4742 0.82 -0.4 158,440 - GFF4742 0.82 -0.3 158,440 - GFF4742 0.82 -0.4 158,799 + GFF4743 0.63 -1.1 158,834 + GFF4743 0.81 -0.1 158,834 + GFF4743 0.81 +0.1 159,153 - GFF4744 0.21 -0.4 159,153 - GFF4744 0.21 -0.0 159,171 - GFF4744 0.23 +0.4 159,171 - GFF4744 0.23 -0.3 159,188 + GFF4744 0.24 -0.1 159,189 - GFF4744 0.24 -0.6 159,189 - GFF4744 0.24 -0.2 159,219 - GFF4744 0.27 -0.3 159,219 - GFF4744 0.27 +0.1 159,219 - GFF4744 0.27 +0.2 159,219 - GFF4744 0.27 -0.2 159,219 - GFF4744 0.27 -0.1 159,377 + GFF4744 0.39 -0.2 159,378 - GFF4744 0.39 +1.5 159,378 - GFF4744 0.39 +2.1 159,506 + GFF4744 0.50 +0.7 159,506 + GFF4744 0.50 +0.3 159,506 + GFF4744 0.50 -0.3 159,507 - GFF4744 0.50 -0.6 159,647 + GFF4744 0.61 +0.2
Or see this region's nucleotide sequence