Strain Fitness in Xanthobacter sp. DMC5 around GFF4739

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4738 and GFF4739 overlap by 4 nucleotidesGFF4739 and GFF4740 are separated by 117 nucleotides GFF4738 - Respiratory nitrate reductase 1 beta chain, at 148,082 to 149,617 GFF4738 GFF4739 - Respiratory nitrate reductase 1 alpha chain, at 149,614 to 153,357 GFF4739 GFF4740 - hypothetical protein, at 153,475 to 156,243 GFF4740 Position (kb) 149 150 151 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 148.744 kb on - strand, within GFF4738at 148.797 kb on + strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.798 kb on - strand, within GFF4738at 148.815 kb on + strand, within GFF4738at 148.816 kb on - strand, within GFF4738at 148.923 kb on + strand, within GFF4738at 148.924 kb on - strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 148.935 kb on + strand, within GFF4738at 149.016 kb on + strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.017 kb on - strand, within GFF4738at 149.085 kb on + strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.086 kb on - strand, within GFF4738at 149.103 kb on + strand, within GFF4738at 149.116 kb on - strand, within GFF4738at 149.316 kb on + strand, within GFF4738at 149.464 kb on - strandat 149.505 kb on + strandat 149.505 kb on + strandat 149.506 kb on - strandat 149.506 kb on - strandat 149.730 kb on - strandat 149.802 kb on - strandat 149.805 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.873 kb on + strandat 149.874 kb on - strandat 149.874 kb on - strandat 150.038 kb on + strand, within GFF4739at 150.041 kb on - strand, within GFF4739at 150.054 kb on + strand, within GFF4739at 150.056 kb on + strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.057 kb on - strand, within GFF4739at 150.224 kb on + strand, within GFF4739at 150.224 kb on + strand, within GFF4739at 150.225 kb on - strand, within GFF4739at 150.225 kb on - strand, within GFF4739at 150.281 kb on + strand, within GFF4739at 150.282 kb on - strand, within GFF4739at 150.294 kb on - strand, within GFF4739at 150.671 kb on + strand, within GFF4739at 150.672 kb on - strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.881 kb on + strand, within GFF4739at 150.882 kb on - strand, within GFF4739at 150.882 kb on - strand, within GFF4739at 150.882 kb on - strand, within GFF4739at 150.964 kb on - strand, within GFF4739at 150.984 kb on - strand, within GFF4739at 151.007 kb on - strand, within GFF4739at 151.017 kb on - strand, within GFF4739at 151.182 kb on - strand, within GFF4739at 151.313 kb on + strand, within GFF4739at 151.313 kb on + strand, within GFF4739at 151.314 kb on - strand, within GFF4739at 151.314 kb on - strand, within GFF4739at 151.314 kb on - strand, within GFF4739at 151.424 kb on + strand, within GFF4739at 151.424 kb on + strand, within GFF4739at 151.424 kb on + strand, within GFF4739at 151.424 kb on + strand, within GFF4739at 151.425 kb on - strand, within GFF4739at 151.500 kb on - strand, within GFF4739at 151.500 kb on - strand, within GFF4739at 151.500 kb on - strand, within GFF4739at 151.523 kb on + strand, within GFF4739at 151.524 kb on - strand, within GFF4739at 151.524 kb on - strand, within GFF4739at 151.524 kb on - strand, within GFF4739at 151.524 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.629 kb on - strand, within GFF4739at 151.698 kb on - strand, within GFF4739at 151.698 kb on - strand, within GFF4739at 151.872 kb on - strand, within GFF4739at 151.916 kb on + strand, within GFF4739at 151.917 kb on - strand, within GFF4739at 151.937 kb on + strand, within GFF4739at 152.061 kb on - strand, within GFF4739at 152.384 kb on + strand, within GFF4739at 152.384 kb on + strand, within GFF4739at 152.385 kb on - strand, within GFF4739at 152.408 kb on + strand, within GFF4739at 152.409 kb on - strand, within GFF4739at 152.507 kb on + strand, within GFF4739at 152.507 kb on + strand, within GFF4739at 152.507 kb on + strand, within GFF4739at 152.543 kb on + strand, within GFF4739at 152.544 kb on - strand, within GFF4739at 152.627 kb on + strand, within GFF4739at 152.627 kb on + strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.699 kb on + strand, within GFF4739at 152.699 kb on + strand, within GFF4739at 152.700 kb on - strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.709 kb on - strand, within GFF4739at 152.744 kb on + strand, within GFF4739at 152.745 kb on - strand, within GFF4739at 152.745 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.916 kb on - strand, within GFF4739at 153.047 kb on + strandat 153.048 kb on - strandat 153.048 kb on - strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.054 kb on - strandat 153.054 kb on - strandat 153.054 kb on - strandat 153.062 kb on + strandat 153.125 kb on + strandat 153.125 kb on + strandat 153.126 kb on - strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.171 kb on - strandat 153.171 kb on - strandat 153.171 kb on - strandat 153.557 kb on + strandat 153.557 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.591 kb on - strandat 153.654 kb on - strandat 153.977 kb on + strand, within GFF4740at 153.977 kb on + strand, within GFF4740at 154.044 kb on - strand, within GFF4740at 154.044 kb on - strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.134 kb on - strand, within GFF4740

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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148,744 - GFF4738 0.43 +0.2
148,797 + GFF4738 0.47 -0.8
148,798 - GFF4738 0.47 -0.3
148,798 - GFF4738 0.47 -1.2
148,815 + GFF4738 0.48 -0.4
148,816 - GFF4738 0.48 +0.5
148,923 + GFF4738 0.55 -0.1
148,924 - GFF4738 0.55 +0.5
148,935 + GFF4738 0.56 +0.6
148,935 + GFF4738 0.56 -0.5
148,935 + GFF4738 0.56 +0.2
149,016 + GFF4738 0.61 +0.3
149,017 - GFF4738 0.61 -0.1
149,017 - GFF4738 0.61 +0.2
149,017 - GFF4738 0.61 -0.2
149,017 - GFF4738 0.61 +0.5
149,085 + GFF4738 0.65 +1.1
149,086 - GFF4738 0.65 -0.8
149,086 - GFF4738 0.65 -0.2
149,086 - GFF4738 0.65 +0.8
149,103 + GFF4738 0.66 -0.4
149,116 - GFF4738 0.67 -0.1
149,316 + GFF4738 0.80 +0.6
149,464 - -0.5
149,505 + +0.5
149,505 + +0.4
149,506 - +0.2
149,506 - -0.2
149,730 - -0.6
149,802 - +0.2
149,805 + -0.4
149,873 + +0.0
149,873 + +0.4
149,873 + +1.2
149,873 + -1.1
149,874 - +0.9
149,874 - +0.5
150,038 + GFF4739 0.11 -0.4
150,041 - GFF4739 0.11 -0.4
150,054 + GFF4739 0.12 +0.2
150,056 + GFF4739 0.12 -1.3
150,057 - GFF4739 0.12 -0.4
150,057 - GFF4739 0.12 -0.3
150,057 - GFF4739 0.12 +0.4
150,224 + GFF4739 0.16 +1.2
150,224 + GFF4739 0.16 -0.2
150,225 - GFF4739 0.16 +0.3
150,225 - GFF4739 0.16 -1.1
150,281 + GFF4739 0.18 -0.4
150,282 - GFF4739 0.18 -0.3
150,294 - GFF4739 0.18 +0.0
150,671 + GFF4739 0.28 -0.1
150,672 - GFF4739 0.28 +0.5
150,881 + GFF4739 0.34 +0.9
150,881 + GFF4739 0.34 -0.8
150,881 + GFF4739 0.34 -0.1
150,881 + GFF4739 0.34 +0.5
150,881 + GFF4739 0.34 -1.2
150,881 + GFF4739 0.34 +0.2
150,881 + GFF4739 0.34 +0.9
150,882 - GFF4739 0.34 -1.8
150,882 - GFF4739 0.34 +1.1
150,882 - GFF4739 0.34 +0.2
150,964 - GFF4739 0.36 -0.1
150,984 - GFF4739 0.37 -0.0
151,007 - GFF4739 0.37 +0.0
151,017 - GFF4739 0.37 +1.0
151,182 - GFF4739 0.42 +1.1
151,313 + GFF4739 0.45 +0.3
151,313 + GFF4739 0.45 +0.2
151,314 - GFF4739 0.45 -1.4
151,314 - GFF4739 0.45 +0.6
151,314 - GFF4739 0.45 -1.1
151,424 + GFF4739 0.48 +0.5
151,424 + GFF4739 0.48 -0.9
151,424 + GFF4739 0.48 +0.4
151,424 + GFF4739 0.48 -1.3
151,425 - GFF4739 0.48 -0.8
151,500 - GFF4739 0.50 +0.1
151,500 - GFF4739 0.50 +0.6
151,500 - GFF4739 0.50 -2.4
151,523 + GFF4739 0.51 -0.4
151,524 - GFF4739 0.51 +0.2
151,524 - GFF4739 0.51 +0.6
151,524 - GFF4739 0.51 -0.7
151,524 - GFF4739 0.51 +0.1
151,629 - GFF4739 0.54 +0.3
151,629 - GFF4739 0.54 +0.3
151,629 - GFF4739 0.54 +0.4
151,629 - GFF4739 0.54 -0.7
151,629 - GFF4739 0.54 -0.3
151,629 - GFF4739 0.54 -0.7
151,698 - GFF4739 0.56 -0.3
151,698 - GFF4739 0.56 -0.8
151,872 - GFF4739 0.60 +0.5
151,916 + GFF4739 0.61 +0.2
151,917 - GFF4739 0.62 -0.1
151,937 + GFF4739 0.62 +0.6
152,061 - GFF4739 0.65 +1.1
152,384 + GFF4739 0.74 -0.8
152,384 + GFF4739 0.74 -0.1
152,385 - GFF4739 0.74 +0.1
152,408 + GFF4739 0.75 +0.0
152,409 - GFF4739 0.75 +0.1
152,507 + GFF4739 0.77 -0.6
152,507 + GFF4739 0.77 +0.5
152,507 + GFF4739 0.77 -0.4
152,543 + GFF4739 0.78 -0.4
152,544 - GFF4739 0.78 +0.3
152,627 + GFF4739 0.80 +0.7
152,627 + GFF4739 0.80 +0.7
152,628 - GFF4739 0.81 -1.3
152,628 - GFF4739 0.81 +0.0
152,628 - GFF4739 0.81 -1.1
152,628 - GFF4739 0.81 -0.4
152,628 - GFF4739 0.81 +0.2
152,699 + GFF4739 0.82 -0.2
152,699 + GFF4739 0.82 +1.8
152,700 - GFF4739 0.82 +0.9
152,708 + GFF4739 0.83 -0.1
152,708 + GFF4739 0.83 -0.5
152,708 + GFF4739 0.83 -1.1
152,709 - GFF4739 0.83 +1.1
152,744 + GFF4739 0.84 -0.0
152,745 - GFF4739 0.84 +0.8
152,745 - GFF4739 0.84 -0.5
152,763 - GFF4739 0.84 +0.4
152,763 - GFF4739 0.84 +0.2
152,763 - GFF4739 0.84 -0.6
152,915 + GFF4739 0.88 -0.4
152,915 + GFF4739 0.88 +0.3
152,915 + GFF4739 0.88 +0.3
152,916 - GFF4739 0.88 +1.3
153,047 + -0.8
153,048 - -0.4
153,048 - -1.2
153,053 + +0.4
153,053 + -0.8
153,053 + +0.2
153,053 + -0.4
153,053 + +0.1
153,053 + +0.5
153,054 - +0.4
153,054 - +0.8
153,054 - +1.1
153,062 + -0.7
153,125 + -0.2
153,125 + +0.3
153,126 - +0.5
153,170 + +0.4
153,170 + +0.5
153,170 + -0.5
153,170 + -0.3
153,171 - +0.4
153,171 - +0.2
153,171 - -0.6
153,557 + -0.1
153,557 + -0.4
153,590 + -0.3
153,590 + -1.0
153,590 + -0.7
153,590 + -1.5
153,590 + -0.1
153,590 + +0.0
153,591 - -0.0
153,654 - -0.1
153,977 + GFF4740 0.18 -0.4
153,977 + GFF4740 0.18 +1.9
154,044 - GFF4740 0.21 +1.1
154,044 - GFF4740 0.21 -0.3
154,103 + GFF4740 0.23 +0.5
154,103 + GFF4740 0.23 -0.3
154,103 + GFF4740 0.23 -0.3
154,134 - GFF4740 0.24 +0.7

Or see this region's nucleotide sequence