Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4618 and GFF4619 overlap by 4 nucleotides GFF4619 and GFF4620 overlap by 4 nucleotides GFF4620 and GFF4621 overlap by 4 nucleotides
GFF4618 - HTH-type transcriptional regulator AcrR, at 26,646 to 27,323
GFF4618
GFF4619 - hypothetical protein, at 27,320 to 28,297
GFF4619
GFF4620 - Vitamin B12 import ATP-binding protein BtuD, at 28,294 to 29,274
GFF4620
GFF4621 - putative multidrug ABC transporter permease YbhS, at 29,271 to 30,407
GFF4621
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1 at 27.428 kb on + strand, within GFF4619 at 27.779 kb on + strand, within GFF4619 at 27.779 kb on + strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.780 kb on - strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.971 kb on + strand, within GFF4619 at 27.972 kb on - strand, within GFF4619 at 27.975 kb on - strand, within GFF4619 at 28.166 kb on + strand, within GFF4619 at 28.166 kb on + strand, within GFF4619 at 28.168 kb on + strand, within GFF4619 at 28.184 kb on + strand, within GFF4619 at 28.184 kb on + strand, within GFF4619 at 28.185 kb on - strand, within GFF4619 at 28.214 kb on + strand at 28.214 kb on + strand at 28.214 kb on + strand at 28.214 kb on + strand at 28.215 kb on - strand at 28.215 kb on - strand at 28.217 kb on - strand at 28.217 kb on - strand at 28.217 kb on - strand at 28.425 kb on - strand, within GFF4620 at 28.567 kb on + strand, within GFF4620 at 28.568 kb on - strand, within GFF4620 at 28.640 kb on - strand, within GFF4620 at 28.901 kb on - strand, within GFF4620 at 28.901 kb on - strand, within GFF4620 at 28.937 kb on - strand, within GFF4620 at 28.937 kb on - strand, within GFF4620 at 28.937 kb on - strand, within GFF4620 at 28.937 kb on - strand, within GFF4620 at 28.937 kb on - strand, within GFF4620 at 29.231 kb on + strand at 29.231 kb on + strand at 29.231 kb on + strand at 29.232 kb on - strand at 29.232 kb on - strand at 29.232 kb on - strand at 29.232 kb on - strand at 29.232 kb on - strand at 29.232 kb on - strand at 29.412 kb on + strand, within GFF4621 at 29.412 kb on + strand, within GFF4621 at 29.794 kb on - strand, within GFF4621 at 30.114 kb on + strand, within GFF4621 at 30.114 kb on + strand, within GFF4621 at 30.115 kb on - strand, within GFF4621
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 27,428 + GFF4619 0.11 -0.0 27,779 + GFF4619 0.47 +0.2 27,779 + GFF4619 0.47 -0.3 27,780 - GFF4619 0.47 -0.9 27,780 - GFF4619 0.47 +0.0 27,780 - GFF4619 0.47 -0.2 27,971 + GFF4619 0.67 +0.1 27,971 + GFF4619 0.67 -0.1 27,971 + GFF4619 0.67 +0.2 27,972 - GFF4619 0.67 -0.1 27,975 - GFF4619 0.67 -0.2 28,166 + GFF4619 0.87 +0.2 28,166 + GFF4619 0.87 -0.1 28,168 + GFF4619 0.87 +0.7 28,184 + GFF4619 0.88 -0.2 28,184 + GFF4619 0.88 -0.6 28,185 - GFF4619 0.88 +0.3 28,214 + +0.4 28,214 + -0.8 28,214 + +0.9 28,214 + -0.3 28,215 - -0.5 28,215 - -0.2 28,217 - +0.6 28,217 - -0.5 28,217 - +1.0 28,425 - GFF4620 0.13 -0.7 28,567 + GFF4620 0.28 -0.5 28,568 - GFF4620 0.28 -0.0 28,640 - GFF4620 0.35 +0.3 28,901 - GFF4620 0.62 +0.3 28,901 - GFF4620 0.62 -0.1 28,937 - GFF4620 0.66 +0.1 28,937 - GFF4620 0.66 +0.0 28,937 - GFF4620 0.66 -0.4 28,937 - GFF4620 0.66 -1.5 28,937 - GFF4620 0.66 -0.4 29,231 + +0.6 29,231 + +0.2 29,231 + +0.0 29,232 - +0.3 29,232 - -0.6 29,232 - -0.2 29,232 - -0.0 29,232 - +0.1 29,232 - +0.5 29,412 + GFF4621 0.12 -0.3 29,412 + GFF4621 0.12 +0.1 29,794 - GFF4621 0.46 -0.4 30,114 + GFF4621 0.74 +0.1 30,114 + GFF4621 0.74 +0.2 30,115 - GFF4621 0.74 -0.5
Or see this region's nucleotide sequence