Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4615 and GFF4616 are separated by 154 nucleotides GFF4616 and GFF4617 are separated by 108 nucleotides GFF4617 and GFF4618 are separated by 233 nucleotides GFF4618 and GFF4619 overlap by 4 nucleotides
GFF4615 - hypothetical protein, at 23,247 to 24,950
GFF4615
GFF4616 - Protein YrdA, at 25,105 to 25,635
GFF4616
GFF4617 - hypothetical protein, at 25,744 to 26,412
GFF4617
GFF4618 - HTH-type transcriptional regulator AcrR, at 26,646 to 27,323
GFF4618
GFF4619 - hypothetical protein, at 27,320 to 28,297
GFF4619
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 24.746 kb on - strand, within GFF4615 at 24.869 kb on - strand at 24.892 kb on + strand at 24.901 kb on + strand at 24.901 kb on + strand at 24.902 kb on - strand at 24.902 kb on - strand at 25.019 kb on + strand at 25.020 kb on - strand at 25.020 kb on - strand at 25.498 kb on + strand, within GFF4616 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.018 kb on + strand, within GFF4617 at 26.019 kb on - strand, within GFF4617 at 26.075 kb on + strand, within GFF4617 at 26.228 kb on + strand, within GFF4617 at 26.228 kb on + strand, within GFF4617 at 26.247 kb on + strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.248 kb on - strand, within GFF4617 at 26.366 kb on - strand at 26.366 kb on - strand at 26.366 kb on - strand at 26.445 kb on + strand at 26.613 kb on - strand at 26.850 kb on + strand, within GFF4618 at 26.850 kb on + strand, within GFF4618 at 26.851 kb on - strand, within GFF4618 at 27.078 kb on + strand, within GFF4618 at 27.078 kb on + strand, within GFF4618 at 27.079 kb on - strand, within GFF4618 at 27.079 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618 at 27.082 kb on - strand, within GFF4618
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 24,746 - GFF4615 0.88 +0.3 24,869 - +0.2 24,892 + -0.1 24,901 + +0.3 24,901 + +0.4 24,902 - +1.1 24,902 - -0.4 25,019 + +0.2 25,020 - +0.3 25,020 - +1.2 25,498 + GFF4616 0.74 +0.0 26,018 + GFF4617 0.41 +0.3 26,018 + GFF4617 0.41 +0.1 26,018 + GFF4617 0.41 +0.1 26,018 + GFF4617 0.41 -1.0 26,018 + GFF4617 0.41 +0.5 26,019 - GFF4617 0.41 +0.1 26,075 + GFF4617 0.49 -1.2 26,228 + GFF4617 0.72 +1.2 26,228 + GFF4617 0.72 -0.3 26,247 + GFF4617 0.75 -0.1 26,248 - GFF4617 0.75 +0.1 26,248 - GFF4617 0.75 -0.2 26,248 - GFF4617 0.75 +0.2 26,248 - GFF4617 0.75 -0.2 26,366 - +0.3 26,366 - +1.0 26,366 - -0.4 26,445 + +0.1 26,613 - -0.3 26,850 + GFF4618 0.30 +1.4 26,850 + GFF4618 0.30 +0.6 26,851 - GFF4618 0.30 +0.1 27,078 + GFF4618 0.64 -1.9 27,078 + GFF4618 0.64 +0.4 27,079 - GFF4618 0.64 -0.2 27,079 - GFF4618 0.64 -0.3 27,082 - GFF4618 0.64 +0.5 27,082 - GFF4618 0.64 -0.2 27,082 - GFF4618 0.64 +0.3
Or see this region's nucleotide sequence