Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4586 and GFF4587 are separated by 65 nucleotides GFF4587 and GFF4588 overlap by 1 nucleotides GFF4588 and GFF4589 are separated by 4 nucleotides
GFF4586 - FeS cluster assembly protein SufB, at 175,069 to 176,553
GFF4586
GFF4587 - putative ATP-dependent transporter SufC, at 176,619 to 177,380
GFF4587
GFF4588 - FeS cluster assembly protein SufD, at 177,380 to 178,723
GFF4588
GFF4589 - Cysteine desulfurase, at 178,728 to 179,993
GFF4589
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2 at 176.404 kb on + strand, within GFF4586 at 176.405 kb on - strand at 176.405 kb on - strand at 176.601 kb on - strand at 176.601 kb on - strand at 176.763 kb on + strand, within GFF4587 at 176.763 kb on + strand, within GFF4587 at 176.764 kb on - strand, within GFF4587 at 176.764 kb on - strand, within GFF4587 at 176.787 kb on + strand, within GFF4587 at 176.942 kb on + strand, within GFF4587 at 176.942 kb on + strand, within GFF4587 at 176.943 kb on - strand, within GFF4587 at 176.943 kb on - strand, within GFF4587 at 176.943 kb on - strand, within GFF4587 at 176.943 kb on - strand, within GFF4587 at 177.123 kb on + strand, within GFF4587 at 177.123 kb on + strand, within GFF4587 at 177.123 kb on + strand, within GFF4587 at 177.124 kb on - strand, within GFF4587 at 177.124 kb on - strand, within GFF4587 at 177.240 kb on + strand, within GFF4587 at 177.241 kb on - strand, within GFF4587 at 177.241 kb on - strand, within GFF4587 at 177.258 kb on + strand, within GFF4587 at 177.258 kb on + strand, within GFF4587 at 177.259 kb on - strand, within GFF4587 at 177.352 kb on - strand at 177.352 kb on - strand at 177.360 kb on + strand at 177.566 kb on + strand, within GFF4588 at 177.806 kb on + strand, within GFF4588 at 177.806 kb on + strand, within GFF4588 at 177.806 kb on + strand, within GFF4588 at 177.806 kb on + strand, within GFF4588 at 177.807 kb on - strand, within GFF4588 at 177.807 kb on - strand, within GFF4588 at 177.807 kb on - strand, within GFF4588 at 177.807 kb on - strand, within GFF4588 at 178.043 kb on + strand, within GFF4588 at 178.044 kb on - strand, within GFF4588 at 178.044 kb on - strand, within GFF4588 at 178.054 kb on + strand, within GFF4588 at 178.054 kb on + strand, within GFF4588 at 178.054 kb on + strand, within GFF4588 at 178.054 kb on + strand, within GFF4588 at 178.054 kb on + strand, within GFF4588 at 178.574 kb on + strand, within GFF4588 at 178.575 kb on - strand, within GFF4588 at 178.591 kb on + strand at 178.592 kb on - strand at 178.779 kb on + strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.849 kb on - strand at 178.911 kb on + strand, within GFF4589 at 178.911 kb on + strand, within GFF4589 at 178.911 kb on + strand, within GFF4589 at 178.911 kb on + strand, within GFF4589 at 178.911 kb on + strand, within GFF4589 at 178.911 kb on + strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.912 kb on - strand, within GFF4589 at 178.923 kb on + strand, within GFF4589 at 178.924 kb on - strand, within GFF4589 at 178.950 kb on + strand, within GFF4589 at 178.950 kb on + strand, within GFF4589 at 178.951 kb on - strand, within GFF4589 at 178.977 kb on + strand, within GFF4589 at 178.977 kb on + strand, within GFF4589 at 178.977 kb on + strand, within GFF4589 at 178.977 kb on + strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 178.978 kb on - strand, within GFF4589 at 179.048 kb on + strand, within GFF4589 at 179.151 kb on - strand, within GFF4589 at 179.430 kb on + strand, within GFF4589 at 179.430 kb on + strand, within GFF4589 at 179.431 kb on - strand, within GFF4589 at 179.431 kb on - strand, within GFF4589 at 179.431 kb on - strand, within GFF4589 at 179.454 kb on + strand, within GFF4589 at 179.454 kb on + strand, within GFF4589 at 179.455 kb on - strand, within GFF4589 at 179.455 kb on - strand, within GFF4589 at 179.455 kb on - strand, within GFF4589 at 179.455 kb on - strand, within GFF4589 at 179.455 kb on - strand, within GFF4589 at 179.490 kb on + strand, within GFF4589 at 179.490 kb on + strand, within GFF4589 at 179.490 kb on + strand, within GFF4589 at 179.490 kb on + strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.491 kb on - strand, within GFF4589 at 179.568 kb on + strand, within GFF4589 at 179.568 kb on + strand, within GFF4589 at 179.647 kb on - strand, within GFF4589 at 179.647 kb on - strand, within GFF4589
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 176,404 + GFF4586 0.90 -0.3 176,405 - +0.9 176,405 - -0.2 176,601 - +0.8 176,601 - +0.0 176,763 + GFF4587 0.19 +0.1 176,763 + GFF4587 0.19 -0.2 176,764 - GFF4587 0.19 +0.2 176,764 - GFF4587 0.19 +1.2 176,787 + GFF4587 0.22 +0.0 176,942 + GFF4587 0.42 +1.2 176,942 + GFF4587 0.42 +0.7 176,943 - GFF4587 0.43 +0.9 176,943 - GFF4587 0.43 -0.2 176,943 - GFF4587 0.43 +0.3 176,943 - GFF4587 0.43 -0.6 177,123 + GFF4587 0.66 -0.8 177,123 + GFF4587 0.66 -0.5 177,123 + GFF4587 0.66 +0.4 177,124 - GFF4587 0.66 -0.3 177,124 - GFF4587 0.66 +0.2 177,240 + GFF4587 0.81 -0.2 177,241 - GFF4587 0.82 +0.9 177,241 - GFF4587 0.82 -0.0 177,258 + GFF4587 0.84 +0.5 177,258 + GFF4587 0.84 -0.1 177,259 - GFF4587 0.84 +0.7 177,352 - +0.4 177,352 - -0.2 177,360 + +0.1 177,566 + GFF4588 0.14 +0.5 177,806 + GFF4588 0.32 +0.3 177,806 + GFF4588 0.32 -1.0 177,806 + GFF4588 0.32 +0.0 177,806 + GFF4588 0.32 -0.8 177,807 - GFF4588 0.32 -0.3 177,807 - GFF4588 0.32 -0.3 177,807 - GFF4588 0.32 +0.4 177,807 - GFF4588 0.32 -1.2 178,043 + GFF4588 0.49 -0.3 178,044 - GFF4588 0.49 -0.3 178,044 - GFF4588 0.49 +0.4 178,054 + GFF4588 0.50 +0.1 178,054 + GFF4588 0.50 -0.3 178,054 + GFF4588 0.50 +0.4 178,054 + GFF4588 0.50 -0.9 178,054 + GFF4588 0.50 +0.2 178,574 + GFF4588 0.89 -1.5 178,575 - GFF4588 0.89 +0.2 178,591 + +0.2 178,592 - -0.5 178,779 + -0.4 178,780 - +1.5 178,780 - +0.5 178,780 - +0.1 178,849 - -0.5 178,911 + GFF4589 0.14 -0.2 178,911 + GFF4589 0.14 -0.9 178,911 + GFF4589 0.14 +1.0 178,911 + GFF4589 0.14 -0.1 178,911 + GFF4589 0.14 -0.2 178,911 + GFF4589 0.14 +0.8 178,912 - GFF4589 0.15 +0.5 178,912 - GFF4589 0.15 +0.5 178,912 - GFF4589 0.15 +0.7 178,912 - GFF4589 0.15 -0.1 178,912 - GFF4589 0.15 +0.0 178,912 - GFF4589 0.15 -0.6 178,923 + GFF4589 0.15 +0.4 178,924 - GFF4589 0.15 -0.3 178,950 + GFF4589 0.18 +0.4 178,950 + GFF4589 0.18 -0.8 178,951 - GFF4589 0.18 -0.4 178,977 + GFF4589 0.20 -0.7 178,977 + GFF4589 0.20 -0.9 178,977 + GFF4589 0.20 +0.1 178,977 + GFF4589 0.20 +0.4 178,978 - GFF4589 0.20 +0.3 178,978 - GFF4589 0.20 +0.3 178,978 - GFF4589 0.20 -0.0 178,978 - GFF4589 0.20 -1.2 178,978 - GFF4589 0.20 -0.0 178,978 - GFF4589 0.20 -0.1 178,978 - GFF4589 0.20 -0.2 178,978 - GFF4589 0.20 -0.3 179,048 + GFF4589 0.25 -0.5 179,151 - GFF4589 0.33 -0.4 179,430 + GFF4589 0.55 -0.6 179,430 + GFF4589 0.55 +0.5 179,431 - GFF4589 0.56 +1.4 179,431 - GFF4589 0.56 -1.0 179,431 - GFF4589 0.56 -0.3 179,454 + GFF4589 0.57 -0.6 179,454 + GFF4589 0.57 +0.8 179,455 - GFF4589 0.57 +0.1 179,455 - GFF4589 0.57 +0.0 179,455 - GFF4589 0.57 +0.4 179,455 - GFF4589 0.57 -0.2 179,455 - GFF4589 0.57 -1.5 179,490 + GFF4589 0.60 +0.3 179,490 + GFF4589 0.60 +0.1 179,490 + GFF4589 0.60 -0.9 179,490 + GFF4589 0.60 +1.8 179,491 - GFF4589 0.60 +0.2 179,491 - GFF4589 0.60 -0.7 179,491 - GFF4589 0.60 -0.8 179,491 - GFF4589 0.60 +1.2 179,491 - GFF4589 0.60 -1.0 179,491 - GFF4589 0.60 +0.4 179,568 + GFF4589 0.66 +0.0 179,568 + GFF4589 0.66 +0.9 179,647 - GFF4589 0.73 -0.1 179,647 - GFF4589 0.73 -0.4
Or see this region's nucleotide sequence