Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4559 and GFF4560 are separated by 397 nucleotides GFF4560 and GFF4561 are separated by 77 nucleotides
GFF4559 - hypothetical protein, at 145,403 to 145,993
GFF4559
GFF4560 - Heme oxygenase PigA, at 146,391 to 146,996
GFF4560
GFF4561 - Virginiamycin B lyase, at 147,074 to 149,716
GFF4561
Position (kb) 146
147 Strain fitness (log2 ratio) -1
0
1 at 145.584 kb on + strand, within GFF4559 at 145.584 kb on + strand, within GFF4559 at 145.585 kb on - strand, within GFF4559 at 146.042 kb on + strand at 146.043 kb on - strand at 146.043 kb on - strand at 146.094 kb on + strand at 146.094 kb on + strand at 146.095 kb on - strand at 146.210 kb on - strand at 146.338 kb on - strand at 146.378 kb on + strand at 146.379 kb on - strand at 146.530 kb on - strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.553 kb on + strand, within GFF4560 at 146.554 kb on - strand, within GFF4560 at 146.554 kb on - strand, within GFF4560 at 146.583 kb on + strand, within GFF4560 at 146.584 kb on - strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.748 kb on + strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.749 kb on - strand, within GFF4560 at 146.973 kb on + strand at 146.973 kb on + strand at 146.973 kb on + strand at 146.974 kb on - strand at 146.974 kb on - strand at 146.974 kb on - strand at 147.024 kb on - strand at 147.039 kb on - strand at 147.347 kb on + strand, within GFF4561 at 147.711 kb on - strand, within GFF4561 at 147.866 kb on + strand, within GFF4561 at 147.867 kb on - strand, within GFF4561 at 147.867 kb on - strand, within GFF4561
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 145,584 + GFF4559 0.31 +0.2 145,584 + GFF4559 0.31 -0.4 145,585 - GFF4559 0.31 -0.9 146,042 + -0.9 146,043 - -0.1 146,043 - -0.0 146,094 + -0.1 146,094 + +1.0 146,095 - -0.3 146,210 - -0.1 146,338 - +0.4 146,378 + +0.3 146,379 - +1.2 146,530 - GFF4560 0.23 +0.9 146,553 + GFF4560 0.27 -0.3 146,553 + GFF4560 0.27 +0.8 146,553 + GFF4560 0.27 -0.4 146,554 - GFF4560 0.27 +1.0 146,554 - GFF4560 0.27 -0.4 146,583 + GFF4560 0.32 +0.4 146,584 - GFF4560 0.32 +0.4 146,748 + GFF4560 0.59 -0.9 146,748 + GFF4560 0.59 -1.0 146,748 + GFF4560 0.59 -0.5 146,749 - GFF4560 0.59 +0.2 146,749 - GFF4560 0.59 +0.0 146,749 - GFF4560 0.59 +0.3 146,749 - GFF4560 0.59 -0.4 146,973 + +1.5 146,973 + +0.5 146,973 + -0.3 146,974 - -1.0 146,974 - +0.5 146,974 - -0.6 147,024 - -0.2 147,039 - -0.5 147,347 + GFF4561 0.10 -0.1 147,711 - GFF4561 0.24 -1.2 147,866 + GFF4561 0.30 +1.2 147,867 - GFF4561 0.30 +1.4 147,867 - GFF4561 0.30 -0.1
Or see this region's nucleotide sequence