Strain Fitness in Xanthobacter sp. DMC5 around GFF4530

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4528 and GFF4529 are separated by 100 nucleotidesGFF4529 and GFF4530 are separated by 70 nucleotidesGFF4530 and GFF4531 are separated by 54 nucleotides GFF4528 - hypothetical protein, at 103,811 to 104,179 GFF4528 GFF4529 - Maleylpyruvate isomerase, at 104,280 to 104,915 GFF4529 GFF4530 - hypothetical protein, at 104,986 to 105,594 GFF4530 GFF4531 - hypothetical protein, at 105,649 to 107,538 GFF4531 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1at 104.006 kb on + strand, within GFF4528at 104.289 kb on + strandat 104.316 kb on + strandat 104.490 kb on + strand, within GFF4529at 104.491 kb on - strand, within GFF4529at 104.491 kb on - strand, within GFF4529at 104.491 kb on - strand, within GFF4529at 104.491 kb on - strand, within GFF4529at 104.491 kb on - strand, within GFF4529at 104.550 kb on + strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.551 kb on - strand, within GFF4529at 104.664 kb on + strand, within GFF4529at 104.848 kb on - strand, within GFF4529at 104.848 kb on - strand, within GFF4529at 104.895 kb on + strandat 104.895 kb on + strandat 104.896 kb on - strandat 104.896 kb on - strandat 104.939 kb on + strandat 105.151 kb on + strand, within GFF4530at 105.151 kb on + strand, within GFF4530at 105.151 kb on + strand, within GFF4530at 105.152 kb on - strand, within GFF4530at 105.152 kb on - strand, within GFF4530at 105.152 kb on - strand, within GFF4530at 105.213 kb on - strand, within GFF4530at 105.221 kb on - strand, within GFF4530at 105.455 kb on + strand, within GFF4530at 105.670 kb on - strandat 105.687 kb on - strandat 105.704 kb on + strandat 105.704 kb on + strandat 105.705 kb on - strandat 105.705 kb on - strandat 105.705 kb on - strandat 105.705 kb on - strandat 105.768 kb on + strandat 105.769 kb on - strandat 105.807 kb on + strandat 105.808 kb on - strandat 105.991 kb on + strand, within GFF4531at 105.991 kb on + strand, within GFF4531at 105.992 kb on - strand, within GFF4531at 105.992 kb on - strand, within GFF4531at 106.093 kb on + strand, within GFF4531at 106.099 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.219 kb on + strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.220 kb on - strand, within GFF4531at 106.261 kb on + strand, within GFF4531at 106.391 kb on - strand, within GFF4531at 106.450 kb on + strand, within GFF4531at 106.451 kb on - strand, within GFF4531at 106.451 kb on - strand, within GFF4531at 106.451 kb on - strand, within GFF4531at 106.573 kb on + strand, within GFF4531at 106.573 kb on + strand, within GFF4531at 106.573 kb on + strand, within GFF4531at 106.573 kb on + strand, within GFF4531at 106.574 kb on - strand, within GFF4531

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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104,006 + GFF4528 0.53 +0.1
104,289 + -1.5
104,316 + +0.5
104,490 + GFF4529 0.33 -0.7
104,491 - GFF4529 0.33 +0.5
104,491 - GFF4529 0.33 +0.4
104,491 - GFF4529 0.33 +0.6
104,491 - GFF4529 0.33 -0.5
104,491 - GFF4529 0.33 +0.5
104,550 + GFF4529 0.42 +0.7
104,551 - GFF4529 0.43 +0.5
104,551 - GFF4529 0.43 -0.3
104,551 - GFF4529 0.43 +1.2
104,551 - GFF4529 0.43 -0.9
104,551 - GFF4529 0.43 +1.3
104,551 - GFF4529 0.43 +0.1
104,551 - GFF4529 0.43 +0.5
104,664 + GFF4529 0.60 -0.3
104,848 - GFF4529 0.89 -0.3
104,848 - GFF4529 0.89 +0.1
104,895 + -0.3
104,895 + -1.3
104,896 - +0.5
104,896 - -0.2
104,939 + -0.3
105,151 + GFF4530 0.27 -0.8
105,151 + GFF4530 0.27 +0.2
105,151 + GFF4530 0.27 -0.1
105,152 - GFF4530 0.27 -1.0
105,152 - GFF4530 0.27 -0.3
105,152 - GFF4530 0.27 +0.4
105,213 - GFF4530 0.37 -0.6
105,221 - GFF4530 0.39 -0.3
105,455 + GFF4530 0.77 -0.3
105,670 - +0.5
105,687 - -0.3
105,704 + +0.3
105,704 + +0.1
105,705 - +0.3
105,705 - +0.1
105,705 - +0.6
105,705 - +0.4
105,768 + -0.5
105,769 - -0.3
105,807 + +0.3
105,808 - +0.0
105,991 + GFF4531 0.18 -0.1
105,991 + GFF4531 0.18 +0.7
105,992 - GFF4531 0.18 +0.2
105,992 - GFF4531 0.18 +0.0
106,093 + GFF4531 0.23 +0.4
106,099 + GFF4531 0.24 +0.7
106,219 + GFF4531 0.30 -0.4
106,219 + GFF4531 0.30 +0.2
106,219 + GFF4531 0.30 -2.4
106,219 + GFF4531 0.30 +0.1
106,219 + GFF4531 0.30 +0.9
106,219 + GFF4531 0.30 -0.2
106,219 + GFF4531 0.30 +0.2
106,219 + GFF4531 0.30 +0.5
106,219 + GFF4531 0.30 -0.4
106,219 + GFF4531 0.30 +0.1
106,219 + GFF4531 0.30 -0.9
106,219 + GFF4531 0.30 +0.5
106,219 + GFF4531 0.30 +0.6
106,219 + GFF4531 0.30 -0.0
106,220 - GFF4531 0.30 -0.2
106,220 - GFF4531 0.30 -0.2
106,220 - GFF4531 0.30 -0.8
106,220 - GFF4531 0.30 +0.6
106,220 - GFF4531 0.30 +0.6
106,220 - GFF4531 0.30 +1.2
106,220 - GFF4531 0.30 +0.8
106,261 + GFF4531 0.32 +1.1
106,391 - GFF4531 0.39 -0.3
106,450 + GFF4531 0.42 +0.4
106,451 - GFF4531 0.42 -0.5
106,451 - GFF4531 0.42 -0.0
106,451 - GFF4531 0.42 -0.1
106,573 + GFF4531 0.49 +1.1
106,573 + GFF4531 0.49 -0.4
106,573 + GFF4531 0.49 -0.5
106,573 + GFF4531 0.49 -1.3
106,574 - GFF4531 0.49 +0.2

Or see this region's nucleotide sequence