Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4522 and GFF4523 are separated by 120 nucleotides GFF4523 and GFF4524 are separated by 65 nucleotides GFF4524 and GFF4525 overlap by 11 nucleotides
GFF4522 - Flagellar transcriptional regulator FtcR, at 96,076 to 96,747
GFF4522
GFF4523 - hypothetical protein, at 96,868 to 98,544
GFF4523
GFF4524 - Regulator of RpoS, at 98,610 to 99,425
GFF4524
GFF4525 - Regulator of RpoS, at 99,415 to 100,710
GFF4525
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -1
0
1 at 95.896 kb on + strand at 95.897 kb on - strand at 95.897 kb on - strand at 96.016 kb on + strand at 96.072 kb on + strand at 96.079 kb on + strand at 96.079 kb on + strand at 96.262 kb on + strand, within GFF4522 at 96.262 kb on + strand, within GFF4522 at 96.263 kb on - strand, within GFF4522 at 96.263 kb on - strand, within GFF4522 at 96.263 kb on - strand, within GFF4522 at 96.483 kb on - strand, within GFF4522 at 96.553 kb on + strand, within GFF4522 at 96.553 kb on + strand, within GFF4522 at 96.554 kb on - strand, within GFF4522 at 96.555 kb on + strand, within GFF4522 at 96.610 kb on + strand, within GFF4522 at 96.610 kb on + strand, within GFF4522 at 96.610 kb on + strand, within GFF4522 at 96.611 kb on - strand, within GFF4522 at 96.611 kb on - strand, within GFF4522 at 96.611 kb on - strand, within GFF4522 at 96.611 kb on - strand, within GFF4522 at 96.722 kb on - strand at 96.731 kb on - strand at 96.736 kb on + strand at 96.737 kb on - strand at 96.737 kb on - strand at 96.737 kb on - strand at 97.037 kb on - strand, within GFF4523 at 97.039 kb on - strand, within GFF4523 at 97.039 kb on - strand, within GFF4523 at 97.039 kb on - strand, within GFF4523 at 97.039 kb on - strand, within GFF4523 at 97.076 kb on + strand, within GFF4523 at 97.162 kb on + strand, within GFF4523 at 97.163 kb on - strand, within GFF4523 at 97.208 kb on - strand, within GFF4523 at 97.260 kb on + strand, within GFF4523 at 97.261 kb on - strand, within GFF4523 at 97.372 kb on + strand, within GFF4523 at 97.372 kb on + strand, within GFF4523 at 97.373 kb on - strand, within GFF4523 at 98.194 kb on - strand, within GFF4523 at 98.280 kb on - strand, within GFF4523 at 98.903 kb on + strand, within GFF4524 at 98.904 kb on - strand, within GFF4524 at 98.944 kb on + strand, within GFF4524 at 99.236 kb on + strand, within GFF4524 at 99.426 kb on + strand at 99.426 kb on + strand at 99.427 kb on - strand at 99.427 kb on - strand at 99.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 95,896 + +1.3 95,897 - -0.7 95,897 - -0.5 96,016 + -1.2 96,072 + -0.5 96,079 + -0.2 96,079 + -1.2 96,262 + GFF4522 0.28 +0.2 96,262 + GFF4522 0.28 -0.0 96,263 - GFF4522 0.28 -0.1 96,263 - GFF4522 0.28 +0.5 96,263 - GFF4522 0.28 +0.1 96,483 - GFF4522 0.61 -0.3 96,553 + GFF4522 0.71 +0.3 96,553 + GFF4522 0.71 -1.3 96,554 - GFF4522 0.71 -0.5 96,555 + GFF4522 0.71 -0.4 96,610 + GFF4522 0.79 -0.4 96,610 + GFF4522 0.79 -0.0 96,610 + GFF4522 0.79 -0.1 96,611 - GFF4522 0.80 +0.9 96,611 - GFF4522 0.80 -0.4 96,611 - GFF4522 0.80 -1.3 96,611 - GFF4522 0.80 -0.5 96,722 - +0.4 96,731 - -0.1 96,736 + -0.0 96,737 - -0.4 96,737 - +0.4 96,737 - -0.3 97,037 - GFF4523 0.10 -0.9 97,039 - GFF4523 0.10 -0.0 97,039 - GFF4523 0.10 -0.5 97,039 - GFF4523 0.10 +0.7 97,039 - GFF4523 0.10 -1.5 97,076 + GFF4523 0.12 -0.2 97,162 + GFF4523 0.18 +0.1 97,163 - GFF4523 0.18 -0.0 97,208 - GFF4523 0.20 +0.8 97,260 + GFF4523 0.23 -0.7 97,261 - GFF4523 0.23 +0.9 97,372 + GFF4523 0.30 -0.6 97,372 + GFF4523 0.30 +0.2 97,373 - GFF4523 0.30 -0.3 98,194 - GFF4523 0.79 -0.4 98,280 - GFF4523 0.84 -0.8 98,903 + GFF4524 0.36 -0.6 98,904 - GFF4524 0.36 +0.0 98,944 + GFF4524 0.41 +0.1 99,236 + GFF4524 0.77 -0.4 99,426 + +0.8 99,426 + -0.2 99,427 - +0.3 99,427 - -0.8 99,427 - +0.1
Or see this region's nucleotide sequence