Strain Fitness in Xanthobacter sp. DMC5 around GFF4521

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4520 and GFF4521 overlap by 4 nucleotidesGFF4521 and GFF4522 are separated by 319 nucleotides GFF4520 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 93,769 to 94,914 GFF4520 GFF4521 - Chemotaxis protein methyltransferase 1, at 94,911 to 95,756 GFF4521 GFF4522 - Flagellar transcriptional regulator FtcR, at 96,076 to 96,747 GFF4522 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.120 kb on + strand, within GFF4520at 94.120 kb on + strand, within GFF4520at 94.120 kb on + strand, within GFF4520at 94.121 kb on - strand, within GFF4520at 94.318 kb on + strand, within GFF4520at 94.318 kb on + strand, within GFF4520at 94.319 kb on - strand, within GFF4520at 94.408 kb on + strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.409 kb on - strand, within GFF4520at 94.410 kb on + strand, within GFF4520at 94.410 kb on + strand, within GFF4520at 94.411 kb on - strand, within GFF4520at 94.549 kb on + strand, within GFF4520at 94.550 kb on - strand, within GFF4520at 94.550 kb on - strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.684 kb on + strand, within GFF4520at 94.992 kb on + strandat 94.992 kb on + strandat 94.992 kb on + strandat 94.992 kb on + strandat 94.993 kb on - strandat 94.993 kb on - strandat 94.993 kb on - strandat 94.993 kb on - strandat 95.262 kb on + strand, within GFF4521at 95.263 kb on - strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.376 kb on + strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.377 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.428 kb on - strand, within GFF4521at 95.487 kb on + strand, within GFF4521at 95.528 kb on + strand, within GFF4521at 95.529 kb on - strand, within GFF4521at 95.529 kb on - strand, within GFF4521at 95.565 kb on + strand, within GFF4521at 95.566 kb on - strand, within GFF4521at 95.709 kb on + strandat 95.709 kb on + strandat 95.709 kb on + strandat 95.710 kb on - strandat 95.896 kb on + strandat 95.897 kb on - strandat 95.897 kb on - strandat 96.016 kb on + strandat 96.072 kb on + strandat 96.079 kb on + strandat 96.079 kb on + strandat 96.262 kb on + strand, within GFF4522at 96.262 kb on + strand, within GFF4522at 96.263 kb on - strand, within GFF4522at 96.263 kb on - strand, within GFF4522at 96.263 kb on - strand, within GFF4522at 96.483 kb on - strand, within GFF4522at 96.553 kb on + strand, within GFF4522at 96.553 kb on + strand, within GFF4522at 96.554 kb on - strand, within GFF4522at 96.555 kb on + strand, within GFF4522at 96.610 kb on + strand, within GFF4522at 96.610 kb on + strand, within GFF4522at 96.610 kb on + strand, within GFF4522at 96.611 kb on - strand, within GFF4522at 96.611 kb on - strand, within GFF4522at 96.611 kb on - strand, within GFF4522at 96.611 kb on - strand, within GFF4522at 96.722 kb on - strandat 96.731 kb on - strandat 96.736 kb on + strandat 96.737 kb on - strandat 96.737 kb on - strandat 96.737 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
94,120 + GFF4520 0.31 -0.5
94,120 + GFF4520 0.31 -0.2
94,120 + GFF4520 0.31 +0.7
94,121 - GFF4520 0.31 -0.6
94,318 + GFF4520 0.48 -2.2
94,318 + GFF4520 0.48 -0.9
94,319 - GFF4520 0.48 -0.0
94,408 + GFF4520 0.56 -1.0
94,409 - GFF4520 0.56 -0.3
94,409 - GFF4520 0.56 -0.1
94,409 - GFF4520 0.56 -0.3
94,410 + GFF4520 0.56 -0.2
94,410 + GFF4520 0.56 +0.5
94,411 - GFF4520 0.56 -0.1
94,549 + GFF4520 0.68 +1.1
94,550 - GFF4520 0.68 -0.5
94,550 - GFF4520 0.68 +0.2
94,684 + GFF4520 0.80 +0.0
94,684 + GFF4520 0.80 -0.9
94,684 + GFF4520 0.80 +1.4
94,992 + -0.4
94,992 + +0.4
94,992 + +0.7
94,992 + -0.2
94,993 - +0.0
94,993 - -0.9
94,993 - -0.5
94,993 - -1.0
95,262 + GFF4521 0.41 -0.4
95,263 - GFF4521 0.42 -0.5
95,376 + GFF4521 0.55 +0.1
95,376 + GFF4521 0.55 +0.5
95,376 + GFF4521 0.55 +0.7
95,377 - GFF4521 0.55 -0.4
95,377 - GFF4521 0.55 -0.4
95,377 - GFF4521 0.55 +0.0
95,428 - GFF4521 0.61 +0.4
95,428 - GFF4521 0.61 +1.5
95,428 - GFF4521 0.61 -0.2
95,487 + GFF4521 0.68 -0.3
95,528 + GFF4521 0.73 +0.5
95,529 - GFF4521 0.73 +0.1
95,529 - GFF4521 0.73 -1.6
95,565 + GFF4521 0.77 -0.1
95,566 - GFF4521 0.77 -0.8
95,709 + +0.7
95,709 + +2.0
95,709 + +0.2
95,710 - +1.0
95,896 + +1.3
95,897 - -0.7
95,897 - -0.5
96,016 + -1.2
96,072 + -0.5
96,079 + -0.2
96,079 + -1.2
96,262 + GFF4522 0.28 +0.2
96,262 + GFF4522 0.28 -0.0
96,263 - GFF4522 0.28 -0.1
96,263 - GFF4522 0.28 +0.5
96,263 - GFF4522 0.28 +0.1
96,483 - GFF4522 0.61 -0.3
96,553 + GFF4522 0.71 +0.3
96,553 + GFF4522 0.71 -1.3
96,554 - GFF4522 0.71 -0.5
96,555 + GFF4522 0.71 -0.4
96,610 + GFF4522 0.79 -0.4
96,610 + GFF4522 0.79 -0.0
96,610 + GFF4522 0.79 -0.1
96,611 - GFF4522 0.80 +0.9
96,611 - GFF4522 0.80 -0.4
96,611 - GFF4522 0.80 -1.3
96,611 - GFF4522 0.80 -0.5
96,722 - +0.4
96,731 - -0.1
96,736 + -0.0
96,737 - -0.4
96,737 - +0.4
96,737 - -0.3

Or see this region's nucleotide sequence