Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4517 and GFF4518 overlap by 4 nucleotides GFF4518 and GFF4519 are separated by 0 nucleotides GFF4519 and GFF4520 overlap by 1 nucleotides
GFF4517 - Sensor histidine kinase RcsC, at 90,210 to 92,882
GFF4517
GFF4518 - hypothetical protein, at 92,879 to 93,391
GFF4518
GFF4519 - Chemotaxis protein CheY, at 93,392 to 93,769
GFF4519
GFF4520 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 93,769 to 94,914
GFF4520
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.901 kb on + strand, within GFF4517 at 91.901 kb on + strand, within GFF4517 at 92.208 kb on + strand, within GFF4517 at 92.209 kb on - strand, within GFF4517 at 92.209 kb on - strand, within GFF4517 at 92.209 kb on - strand, within GFF4517 at 92.235 kb on + strand, within GFF4517 at 92.236 kb on - strand, within GFF4517 at 92.236 kb on - strand, within GFF4517 at 92.448 kb on + strand, within GFF4517 at 92.448 kb on + strand, within GFF4517 at 92.449 kb on - strand, within GFF4517 at 92.449 kb on - strand, within GFF4517 at 92.577 kb on + strand, within GFF4517 at 92.890 kb on + strand at 92.943 kb on - strand, within GFF4518 at 92.943 kb on - strand, within GFF4518 at 92.943 kb on - strand, within GFF4518 at 92.943 kb on - strand, within GFF4518 at 93.181 kb on + strand, within GFF4518 at 93.181 kb on + strand, within GFF4518 at 93.181 kb on + strand, within GFF4518 at 93.182 kb on - strand, within GFF4518 at 93.693 kb on - strand, within GFF4519 at 93.693 kb on - strand, within GFF4519 at 94.120 kb on + strand, within GFF4520 at 94.120 kb on + strand, within GFF4520 at 94.120 kb on + strand, within GFF4520 at 94.121 kb on - strand, within GFF4520 at 94.318 kb on + strand, within GFF4520 at 94.318 kb on + strand, within GFF4520 at 94.319 kb on - strand, within GFF4520
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 91,901 + GFF4517 0.63 -0.5 91,901 + GFF4517 0.63 +0.4 92,208 + GFF4517 0.75 +0.1 92,209 - GFF4517 0.75 +1.1 92,209 - GFF4517 0.75 +0.5 92,209 - GFF4517 0.75 -0.0 92,235 + GFF4517 0.76 -0.6 92,236 - GFF4517 0.76 +1.1 92,236 - GFF4517 0.76 -0.4 92,448 + GFF4517 0.84 -0.3 92,448 + GFF4517 0.84 -1.1 92,449 - GFF4517 0.84 -0.3 92,449 - GFF4517 0.84 -0.0 92,577 + GFF4517 0.89 +0.0 92,890 + -0.5 92,943 - GFF4518 0.12 +0.1 92,943 - GFF4518 0.12 +0.4 92,943 - GFF4518 0.12 +0.1 92,943 - GFF4518 0.12 +0.8 93,181 + GFF4518 0.59 -0.8 93,181 + GFF4518 0.59 +0.2 93,181 + GFF4518 0.59 +1.3 93,182 - GFF4518 0.59 +0.3 93,693 - GFF4519 0.80 -0.5 93,693 - GFF4519 0.80 +1.2 94,120 + GFF4520 0.31 -0.5 94,120 + GFF4520 0.31 -0.2 94,120 + GFF4520 0.31 +0.7 94,121 - GFF4520 0.31 -0.6 94,318 + GFF4520 0.48 -2.2 94,318 + GFF4520 0.48 -0.9 94,319 - GFF4520 0.48 -0.0
Or see this region's nucleotide sequence