Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4504 and GFF4505 are separated by 32 nucleotides GFF4505 and GFF4506 are separated by 3 nucleotides
GFF4504 - Flagellar hook protein FlgE, at 79,942 to 81,198
GFF4504
GFF4505 - hypothetical protein, at 81,231 to 82,685
GFF4505
GFF4506 - hypothetical protein, at 82,689 to 83,738
GFF4506
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1 at 80.323 kb on + strand, within GFF4504 at 80.323 kb on + strand, within GFF4504 at 80.324 kb on - strand, within GFF4504 at 80.324 kb on - strand, within GFF4504 at 80.386 kb on - strand, within GFF4504 at 80.386 kb on - strand, within GFF4504 at 80.620 kb on + strand, within GFF4504 at 80.659 kb on + strand, within GFF4504 at 80.659 kb on + strand, within GFF4504 at 80.660 kb on - strand, within GFF4504 at 80.803 kb on + strand, within GFF4504 at 80.804 kb on - strand, within GFF4504 at 80.804 kb on - strand, within GFF4504 at 80.920 kb on + strand, within GFF4504 at 80.920 kb on + strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.921 kb on - strand, within GFF4504 at 80.984 kb on - strand, within GFF4504 at 81.127 kb on + strand at 81.127 kb on + strand at 81.127 kb on + strand at 81.128 kb on - strand at 81.891 kb on + strand, within GFF4505 at 81.892 kb on - strand, within GFF4505 at 81.892 kb on - strand, within GFF4505 at 81.956 kb on + strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 81.957 kb on - strand, within GFF4505 at 82.092 kb on + strand, within GFF4505 at 82.404 kb on + strand, within GFF4505 at 82.405 kb on - strand, within GFF4505 at 82.405 kb on - strand, within GFF4505 at 82.405 kb on - strand, within GFF4505 at 82.584 kb on + strand at 82.585 kb on - strand at 82.585 kb on - strand at 82.656 kb on + strand at 82.701 kb on + strand at 82.701 kb on + strand at 82.701 kb on + strand at 82.701 kb on + strand at 82.702 kb on - strand at 82.702 kb on - strand at 82.702 kb on - strand at 82.702 kb on - strand at 83.085 kb on + strand, within GFF4506 at 83.086 kb on - strand, within GFF4506 at 83.130 kb on + strand, within GFF4506 at 83.131 kb on - strand, within GFF4506 at 83.131 kb on - strand, within GFF4506 at 83.225 kb on + strand, within GFF4506 at 83.225 kb on + strand, within GFF4506 at 83.225 kb on + strand, within GFF4506 at 83.226 kb on - strand, within GFF4506 at 83.516 kb on - strand, within GFF4506 at 83.516 kb on - strand, within GFF4506 at 83.516 kb on - strand, within GFF4506
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 80,323 + GFF4504 0.30 -0.2 80,323 + GFF4504 0.30 -0.0 80,324 - GFF4504 0.30 -0.4 80,324 - GFF4504 0.30 -0.7 80,386 - GFF4504 0.35 -0.0 80,386 - GFF4504 0.35 -0.2 80,620 + GFF4504 0.54 +0.3 80,659 + GFF4504 0.57 -0.4 80,659 + GFF4504 0.57 +0.2 80,660 - GFF4504 0.57 -0.0 80,803 + GFF4504 0.68 +0.9 80,804 - GFF4504 0.69 -1.0 80,804 - GFF4504 0.69 +0.1 80,920 + GFF4504 0.78 +0.4 80,920 + GFF4504 0.78 -0.2 80,921 - GFF4504 0.78 -0.2 80,921 - GFF4504 0.78 -0.4 80,921 - GFF4504 0.78 +0.6 80,984 - GFF4504 0.83 -0.2 81,127 + -0.8 81,127 + -0.0 81,127 + +0.1 81,128 - +0.4 81,891 + GFF4505 0.45 -0.1 81,892 - GFF4505 0.45 +0.1 81,892 - GFF4505 0.45 +0.5 81,956 + GFF4505 0.50 +0.2 81,957 - GFF4505 0.50 +0.8 81,957 - GFF4505 0.50 -0.1 81,957 - GFF4505 0.50 +0.0 82,092 + GFF4505 0.59 +0.5 82,404 + GFF4505 0.81 -0.6 82,405 - GFF4505 0.81 -0.3 82,405 - GFF4505 0.81 -1.2 82,405 - GFF4505 0.81 -0.7 82,584 + -0.5 82,585 - +0.3 82,585 - -0.6 82,656 + +0.5 82,701 + +0.1 82,701 + +0.5 82,701 + -0.0 82,701 + -0.3 82,702 - -0.6 82,702 - -1.3 82,702 - +0.2 82,702 - +1.5 83,085 + GFF4506 0.38 +0.3 83,086 - GFF4506 0.38 +0.1 83,130 + GFF4506 0.42 +0.3 83,131 - GFF4506 0.42 +0.3 83,131 - GFF4506 0.42 +0.6 83,225 + GFF4506 0.51 +0.4 83,225 + GFF4506 0.51 -0.4 83,225 + GFF4506 0.51 +0.1 83,226 - GFF4506 0.51 -0.5 83,516 - GFF4506 0.79 -0.2 83,516 - GFF4506 0.79 -0.2 83,516 - GFF4506 0.79 -1.8
Or see this region's nucleotide sequence