Strain Fitness in Xanthobacter sp. DMC5 around GFF4458

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4457 and GFF4458 are separated by 207 nucleotidesGFF4458 and GFF4459 overlap by 8 nucleotides GFF4457 - hypothetical protein, at 35,036 to 36,736 GFF4457 GFF4458 - Transcriptional regulatory protein ZraR, at 36,944 to 38,356 GFF4458 GFF4459 - Adaptive-response sensory-kinase SasA, at 38,349 to 40,433 GFF4459 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -1 0 1at 36.107 kb on + strand, within GFF4457at 36.107 kb on + strand, within GFF4457at 36.107 kb on + strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.108 kb on - strand, within GFF4457at 36.218 kb on + strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.219 kb on - strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.350 kb on + strand, within GFF4457at 36.351 kb on - strand, within GFF4457at 36.362 kb on + strand, within GFF4457at 36.398 kb on + strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.399 kb on - strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.413 kb on + strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.414 kb on - strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.485 kb on + strand, within GFF4457at 36.486 kb on - strand, within GFF4457at 36.486 kb on - strand, within GFF4457at 37.737 kb on - strand, within GFF4458at 37.737 kb on - strand, within GFF4458at 37.737 kb on - strand, within GFF4458at 37.940 kb on + strand, within GFF4458at 37.940 kb on + strand, within GFF4458at 37.941 kb on - strand, within GFF4458at 37.941 kb on - strand, within GFF4458at 37.941 kb on - strand, within GFF4458at 37.941 kb on - strand, within GFF4458at 38.571 kb on + strand, within GFF4459at 38.721 kb on + strand, within GFF4459at 38.722 kb on - strand, within GFF4459at 39.273 kb on + strand, within GFF4459at 39.330 kb on + strand, within GFF4459at 39.330 kb on + strand, within GFF4459at 39.330 kb on + strand, within GFF4459at 39.330 kb on + strand, within GFF4459at 39.331 kb on - strand, within GFF4459at 39.331 kb on - strand, within GFF4459at 39.331 kb on - strand, within GFF4459

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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36,107 + GFF4457 0.63 +0.9
36,107 + GFF4457 0.63 -0.1
36,107 + GFF4457 0.63 +0.2
36,108 - GFF4457 0.63 -0.3
36,108 - GFF4457 0.63 -1.1
36,108 - GFF4457 0.63 -0.0
36,108 - GFF4457 0.63 +0.2
36,108 - GFF4457 0.63 +0.2
36,108 - GFF4457 0.63 -0.2
36,108 - GFF4457 0.63 +0.1
36,218 + GFF4457 0.69 +0.5
36,219 - GFF4457 0.70 +0.3
36,219 - GFF4457 0.70 +1.0
36,219 - GFF4457 0.70 -0.3
36,219 - GFF4457 0.70 -0.0
36,219 - GFF4457 0.70 +1.2
36,219 - GFF4457 0.70 -0.3
36,219 - GFF4457 0.70 +0.8
36,350 + GFF4457 0.77 +1.0
36,350 + GFF4457 0.77 +0.7
36,350 + GFF4457 0.77 +0.1
36,351 - GFF4457 0.77 +0.9
36,362 + GFF4457 0.78 -0.6
36,398 + GFF4457 0.80 -0.0
36,399 - GFF4457 0.80 +0.3
36,399 - GFF4457 0.80 -0.5
36,399 - GFF4457 0.80 -0.9
36,413 + GFF4457 0.81 -0.1
36,413 + GFF4457 0.81 -1.0
36,413 + GFF4457 0.81 +0.2
36,413 + GFF4457 0.81 +0.0
36,413 + GFF4457 0.81 -0.1
36,414 - GFF4457 0.81 +1.3
36,414 - GFF4457 0.81 +0.7
36,414 - GFF4457 0.81 -0.6
36,414 - GFF4457 0.81 -0.3
36,485 + GFF4457 0.85 +0.7
36,485 + GFF4457 0.85 +0.4
36,485 + GFF4457 0.85 -0.9
36,485 + GFF4457 0.85 +0.8
36,486 - GFF4457 0.85 +0.1
36,486 - GFF4457 0.85 -1.2
37,737 - GFF4458 0.56 +0.3
37,737 - GFF4458 0.56 -0.3
37,737 - GFF4458 0.56 -0.3
37,940 + GFF4458 0.70 -0.6
37,940 + GFF4458 0.70 -0.8
37,941 - GFF4458 0.71 -0.8
37,941 - GFF4458 0.71 +0.6
37,941 - GFF4458 0.71 +1.0
37,941 - GFF4458 0.71 +0.5
38,571 + GFF4459 0.11 -0.1
38,721 + GFF4459 0.18 +0.6
38,722 - GFF4459 0.18 -0.0
39,273 + GFF4459 0.44 -0.4
39,330 + GFF4459 0.47 -0.3
39,330 + GFF4459 0.47 -0.6
39,330 + GFF4459 0.47 +0.5
39,330 + GFF4459 0.47 +0.5
39,331 - GFF4459 0.47 +0.5
39,331 - GFF4459 0.47 +0.2
39,331 - GFF4459 0.47 -0.3

Or see this region's nucleotide sequence