Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4415 and GFF4416 are separated by 148 nucleotides GFF4416 and GFF4417 are separated by 133 nucleotides
GFF4415 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 222,434 to 223,276
GFF4415
GFF4416 - Thiosulfate sulfurtransferase GlpE, at 223,425 to 224,222
GFF4416
GFF4417 - hypothetical protein, at 224,356 to 226,020
GFF4417
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.481 kb on - strand at 222.481 kb on - strand at 222.966 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.163 kb on + strand, within GFF4415 at 223.270 kb on - strand at 223.302 kb on + strand at 223.316 kb on + strand at 223.316 kb on + strand at 223.317 kb on - strand at 223.317 kb on - strand at 223.453 kb on + strand at 223.597 kb on + strand, within GFF4416 at 223.597 kb on + strand, within GFF4416 at 223.597 kb on + strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.598 kb on - strand, within GFF4416 at 223.936 kb on + strand, within GFF4416 at 223.937 kb on - strand, within GFF4416 at 223.993 kb on + strand, within GFF4416 at 223.994 kb on - strand, within GFF4416 at 224.018 kb on - strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.023 kb on + strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.024 kb on - strand, within GFF4416 at 224.301 kb on - strand at 224.432 kb on + strand at 224.432 kb on + strand at 224.432 kb on + strand at 224.433 kb on - strand at 224.433 kb on - strand at 224.433 kb on - strand at 224.468 kb on - strand at 224.540 kb on + strand, within GFF4417 at 224.720 kb on + strand, within GFF4417 at 224.826 kb on - strand, within GFF4417 at 224.826 kb on - strand, within GFF4417 at 224.951 kb on - strand, within GFF4417 at 225.141 kb on - strand, within GFF4417
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 222,481 - -0.8 222,481 - -1.1 222,966 + GFF4415 0.63 -0.8 223,163 + GFF4415 0.86 -0.2 223,163 + GFF4415 0.86 +1.0 223,163 + GFF4415 0.86 +0.1 223,270 - -0.4 223,302 + +0.6 223,316 + -0.1 223,316 + -0.9 223,317 - -0.8 223,317 - -0.6 223,453 + +0.2 223,597 + GFF4416 0.22 +0.1 223,597 + GFF4416 0.22 +0.4 223,597 + GFF4416 0.22 -0.8 223,598 - GFF4416 0.22 +0.4 223,598 - GFF4416 0.22 +0.4 223,598 - GFF4416 0.22 +0.5 223,598 - GFF4416 0.22 -0.3 223,598 - GFF4416 0.22 -0.7 223,598 - GFF4416 0.22 +0.2 223,598 - GFF4416 0.22 -0.0 223,598 - GFF4416 0.22 +0.6 223,936 + GFF4416 0.64 +0.4 223,937 - GFF4416 0.64 -0.7 223,993 + GFF4416 0.71 +0.4 223,994 - GFF4416 0.71 +0.2 224,018 - GFF4416 0.74 +0.5 224,023 + GFF4416 0.75 -0.1 224,023 + GFF4416 0.75 -0.1 224,023 + GFF4416 0.75 -0.1 224,023 + GFF4416 0.75 +0.2 224,023 + GFF4416 0.75 -0.9 224,024 - GFF4416 0.75 +0.9 224,024 - GFF4416 0.75 -0.2 224,024 - GFF4416 0.75 -0.1 224,024 - GFF4416 0.75 -1.6 224,024 - GFF4416 0.75 -1.0 224,301 - -0.2 224,432 + -0.5 224,432 + -0.1 224,432 + +0.2 224,433 - -3.2 224,433 - +0.3 224,433 - -0.3 224,468 - -0.8 224,540 + GFF4417 0.11 -0.5 224,720 + GFF4417 0.22 -0.7 224,826 - GFF4417 0.28 +0.7 224,826 - GFF4417 0.28 -0.8 224,951 - GFF4417 0.36 -1.6 225,141 - GFF4417 0.47 -0.4
Or see this region's nucleotide sequence