Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF42 and GFF43 are separated by 14 nucleotides GFF43 and GFF44 are separated by 117 nucleotides GFF44 and GFF45 are separated by 484 nucleotides
GFF42 - hypothetical protein, at 51,188 to 51,856
GFF42
GFF43 - Deaminated glutathione amidase, at 51,871 to 52,677
GFF43
GFF44 - HTH-type transcriptional regulator GltR, at 52,795 to 53,715
GFF44
GFF45 - Spermidine/putrescine import ATP-binding protein PotA, at 54,200 to 55,378
GFF45
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 51.845 kb on - strand at 51.926 kb on + strand at 52.000 kb on + strand, within GFF43 at 52.000 kb on + strand, within GFF43 at 52.001 kb on - strand, within GFF43 at 52.001 kb on - strand, within GFF43 at 52.001 kb on - strand, within GFF43 at 52.001 kb on - strand, within GFF43 at 52.001 kb on - strand, within GFF43 at 52.256 kb on + strand, within GFF43 at 52.257 kb on - strand, within GFF43 at 52.302 kb on - strand, within GFF43 at 52.398 kb on - strand, within GFF43 at 52.449 kb on + strand, within GFF43 at 52.450 kb on - strand, within GFF43 at 52.450 kb on - strand, within GFF43 at 52.481 kb on + strand, within GFF43 at 52.481 kb on + strand, within GFF43 at 52.481 kb on + strand, within GFF43 at 52.482 kb on - strand, within GFF43 at 52.551 kb on - strand, within GFF43 at 52.551 kb on - strand, within GFF43 at 52.554 kb on - strand, within GFF43 at 52.554 kb on - strand, within GFF43 at 52.741 kb on + strand at 52.769 kb on - strand at 52.769 kb on - strand at 52.796 kb on + strand at 53.231 kb on + strand, within GFF44 at 53.231 kb on + strand, within GFF44 at 53.231 kb on + strand, within GFF44 at 53.231 kb on + strand, within GFF44 at 53.232 kb on - strand, within GFF44 at 53.232 kb on - strand, within GFF44 at 53.232 kb on - strand, within GFF44 at 53.411 kb on + strand, within GFF44 at 53.412 kb on - strand, within GFF44 at 53.412 kb on - strand, within GFF44 at 53.428 kb on - strand, within GFF44 at 53.826 kb on - strand at 53.826 kb on - strand at 53.844 kb on + strand at 53.879 kb on + strand at 53.880 kb on - strand at 53.882 kb on - strand at 54.087 kb on + strand at 54.365 kb on - strand, within GFF45 at 54.368 kb on + strand, within GFF45 at 54.368 kb on + strand, within GFF45 at 54.368 kb on + strand, within GFF45 at 54.368 kb on + strand, within GFF45 at 54.369 kb on - strand, within GFF45 at 54.369 kb on - strand, within GFF45 at 54.369 kb on - strand, within GFF45 at 54.369 kb on - strand, within GFF45
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 51,845 - +0.6 51,926 + -0.4 52,000 + GFF43 0.16 +0.2 52,000 + GFF43 0.16 +0.1 52,001 - GFF43 0.16 +1.0 52,001 - GFF43 0.16 +1.3 52,001 - GFF43 0.16 +0.5 52,001 - GFF43 0.16 +1.4 52,001 - GFF43 0.16 +1.1 52,256 + GFF43 0.48 +0.2 52,257 - GFF43 0.48 +1.4 52,302 - GFF43 0.53 -0.3 52,398 - GFF43 0.65 +0.1 52,449 + GFF43 0.72 -0.2 52,450 - GFF43 0.72 +1.4 52,450 - GFF43 0.72 +0.3 52,481 + GFF43 0.76 -0.1 52,481 + GFF43 0.76 +0.7 52,481 + GFF43 0.76 +0.1 52,482 - GFF43 0.76 +0.5 52,551 - GFF43 0.84 +1.0 52,551 - GFF43 0.84 -0.3 52,554 - GFF43 0.85 +0.1 52,554 - GFF43 0.85 +0.3 52,741 + -0.3 52,769 - +0.1 52,769 - +0.3 52,796 + -0.1 53,231 + GFF44 0.47 -0.2 53,231 + GFF44 0.47 +1.4 53,231 + GFF44 0.47 +0.9 53,231 + GFF44 0.47 +0.9 53,232 - GFF44 0.47 -0.6 53,232 - GFF44 0.47 -0.4 53,232 - GFF44 0.47 -0.1 53,411 + GFF44 0.67 -0.2 53,412 - GFF44 0.67 +0.4 53,412 - GFF44 0.67 -0.3 53,428 - GFF44 0.69 -0.2 53,826 - +0.5 53,826 - -0.2 53,844 + -0.9 53,879 + +0.1 53,880 - -0.5 53,882 - -0.2 54,087 + +1.2 54,365 - GFF45 0.14 -1.8 54,368 + GFF45 0.14 -1.7 54,368 + GFF45 0.14 -1.2 54,368 + GFF45 0.14 -0.9 54,368 + GFF45 0.14 -0.1 54,369 - GFF45 0.14 -0.8 54,369 - GFF45 0.14 +0.1 54,369 - GFF45 0.14 -0.6 54,369 - GFF45 0.14 -1.4
Or see this region's nucleotide sequence