Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4374 and GFF4375 are separated by 9 nucleotides GFF4375 and GFF4376 are separated by 24 nucleotides GFF4376 and GFF4377 are separated by 26 nucleotides
GFF4374 - Adaptive-response sensory-kinase SasA, at 163,617 to 165,011
GFF4374
GFF4375 - 2-amino-5-chloromuconic acid deaminase, at 165,021 to 166,367
GFF4375
GFF4376 - hypothetical protein, at 166,392 to 166,772
GFF4376
GFF4377 - Anthranilate 3-monooxygenase oxygenase component, at 166,799 to 168,283
GFF4377
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1 at 164.094 kb on + strand, within GFF4374 at 164.094 kb on + strand, within GFF4374 at 164.105 kb on - strand, within GFF4374 at 164.310 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.413 kb on - strand, within GFF4374 at 164.718 kb on + strand, within GFF4374 at 164.719 kb on - strand, within GFF4374 at 164.719 kb on - strand, within GFF4374 at 165.209 kb on - strand, within GFF4375 at 165.346 kb on + strand, within GFF4375 at 165.346 kb on + strand, within GFF4375 at 165.445 kb on + strand, within GFF4375 at 165.445 kb on + strand, within GFF4375 at 165.446 kb on - strand, within GFF4375 at 165.795 kb on + strand, within GFF4375 at 165.796 kb on - strand, within GFF4375 at 165.796 kb on - strand, within GFF4375 at 166.436 kb on + strand, within GFF4376 at 166.484 kb on - strand, within GFF4376 at 166.484 kb on - strand, within GFF4376 at 166.700 kb on - strand, within GFF4376 at 166.700 kb on - strand, within GFF4376 at 166.739 kb on + strand at 166.849 kb on - strand at 166.849 kb on - strand at 166.896 kb on + strand at 166.896 kb on + strand at 166.896 kb on + strand at 166.896 kb on + strand at 166.897 kb on - strand at 166.897 kb on - strand at 166.897 kb on - strand at 166.897 kb on - strand at 166.897 kb on - strand at 166.941 kb on + strand at 166.941 kb on + strand at 166.942 kb on - strand at 166.942 kb on - strand at 166.954 kb on - strand, within GFF4377 at 167.007 kb on + strand, within GFF4377 at 167.007 kb on + strand, within GFF4377 at 167.008 kb on - strand, within GFF4377 at 167.088 kb on + strand, within GFF4377 at 167.089 kb on - strand, within GFF4377 at 167.164 kb on - strand, within GFF4377 at 167.193 kb on + strand, within GFF4377 at 167.193 kb on + strand, within GFF4377 at 167.221 kb on - strand, within GFF4377 at 167.221 kb on - strand, within GFF4377 at 167.229 kb on + strand, within GFF4377 at 167.229 kb on + strand, within GFF4377 at 167.230 kb on - strand, within GFF4377 at 167.230 kb on - strand, within GFF4377 at 167.232 kb on + strand, within GFF4377 at 167.232 kb on + strand, within GFF4377 at 167.233 kb on - strand, within GFF4377 at 167.233 kb on - strand, within GFF4377
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 164,094 + GFF4374 0.34 -0.5 164,094 + GFF4374 0.34 -0.1 164,105 - GFF4374 0.35 -0.3 164,310 - GFF4374 0.50 +1.1 164,413 - GFF4374 0.57 -0.1 164,413 - GFF4374 0.57 +0.2 164,413 - GFF4374 0.57 +0.9 164,718 + GFF4374 0.79 +0.6 164,719 - GFF4374 0.79 +0.4 164,719 - GFF4374 0.79 +1.6 165,209 - GFF4375 0.14 -1.0 165,346 + GFF4375 0.24 -0.2 165,346 + GFF4375 0.24 -0.4 165,445 + GFF4375 0.31 -0.2 165,445 + GFF4375 0.31 +0.1 165,446 - GFF4375 0.32 +1.0 165,795 + GFF4375 0.57 +0.3 165,796 - GFF4375 0.58 -0.1 165,796 - GFF4375 0.58 -0.9 166,436 + GFF4376 0.12 +0.9 166,484 - GFF4376 0.24 +1.5 166,484 - GFF4376 0.24 -0.3 166,700 - GFF4376 0.81 -0.5 166,700 - GFF4376 0.81 -0.1 166,739 + +0.1 166,849 - -0.1 166,849 - +0.1 166,896 + -0.7 166,896 + +0.3 166,896 + -0.3 166,896 + +0.7 166,897 - +0.6 166,897 - -0.6 166,897 - +0.1 166,897 - +0.2 166,897 - -0.2 166,941 + +0.4 166,941 + -1.3 166,942 - -0.6 166,942 - +0.7 166,954 - GFF4377 0.10 -1.3 167,007 + GFF4377 0.14 -0.6 167,007 + GFF4377 0.14 -0.3 167,008 - GFF4377 0.14 -1.0 167,088 + GFF4377 0.19 -0.5 167,089 - GFF4377 0.20 -0.1 167,164 - GFF4377 0.25 +0.2 167,193 + GFF4377 0.27 +0.1 167,193 + GFF4377 0.27 +0.4 167,221 - GFF4377 0.28 -0.3 167,221 - GFF4377 0.28 +0.9 167,229 + GFF4377 0.29 -0.3 167,229 + GFF4377 0.29 -0.7 167,230 - GFF4377 0.29 +1.0 167,230 - GFF4377 0.29 -0.3 167,232 + GFF4377 0.29 +1.4 167,232 + GFF4377 0.29 -0.5 167,233 - GFF4377 0.29 +1.5 167,233 - GFF4377 0.29 +0.3
Or see this region's nucleotide sequence