Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4301 and GFF4302 are separated by 89 nucleotides GFF4302 and GFF4303 are separated by 3 nucleotides GFF4303 and GFF4304 overlap by 1 nucleotides GFF4304 and GFF4305 overlap by 1 nucleotides
GFF4301 - hypothetical protein, at 81,022 to 82,194
GFF4301
GFF4302 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 82,284 to 83,009
GFF4302
GFF4303 - Lipopolysaccharide export system ATP-binding protein LptB, at 83,013 to 83,774
GFF4303
GFF4304 - hypothetical protein, at 83,774 to 84,610
GFF4304
GFF4305 - High-affinity branched-chain amino acid transport system permease protein LivH, at 84,610 to 85,482
GFF4305
Position (kb) 83
84 Strain fitness (log2 ratio) -2
-1
0
1 at 82.079 kb on + strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.100 kb on - strand at 82.101 kb on + strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.103 kb on + strand at 82.104 kb on - strand at 82.313 kb on - strand at 82.313 kb on - strand at 82.651 kb on + strand, within GFF4302 at 82.651 kb on + strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.972 kb on + strand at 82.972 kb on + strand at 83.037 kb on - strand at 83.038 kb on + strand at 83.039 kb on - strand at 83.320 kb on + strand, within GFF4303 at 83.320 kb on + strand, within GFF4303 at 83.595 kb on - strand, within GFF4303 at 83.982 kb on + strand, within GFF4304 at 83.982 kb on + strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 83.983 kb on - strand, within GFF4304 at 84.040 kb on - strand, within GFF4304 at 84.051 kb on + strand, within GFF4304 at 84.052 kb on - strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.234 kb on + strand, within GFF4304 at 84.235 kb on - strand, within GFF4304 at 84.235 kb on - strand, within GFF4304 at 84.244 kb on - strand, within GFF4304 at 84.244 kb on - strand, within GFF4304 at 84.256 kb on - strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.354 kb on + strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.355 kb on - strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.451 kb on + strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.452 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.454 kb on - strand, within GFF4304 at 84.543 kb on + strand at 84.544 kb on - strand at 84.552 kb on + strand at 84.552 kb on + strand at 84.553 kb on - strand at 84.600 kb on + strand at 84.600 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 82,079 + +0.2 82,080 - +0.5 82,080 - +0.2 82,080 - -0.7 82,080 - +0.2 82,080 - +0.6 82,100 - -0.3 82,101 + -0.7 82,102 - +0.3 82,102 - +0.3 82,102 - -1.3 82,102 - +0.7 82,102 - -0.4 82,103 + -0.2 82,104 - +0.4 82,313 - +0.2 82,313 - -0.5 82,651 + GFF4302 0.51 -0.1 82,651 + GFF4302 0.51 -0.2 82,652 - GFF4302 0.51 -0.1 82,652 - GFF4302 0.51 -1.3 82,652 - GFF4302 0.51 -0.6 82,972 + +0.5 82,972 + -0.8 83,037 - -0.1 83,038 + +0.1 83,039 - -0.1 83,320 + GFF4303 0.40 -0.5 83,320 + GFF4303 0.40 +0.4 83,595 - GFF4303 0.76 -0.1 83,982 + GFF4304 0.25 -0.1 83,982 + GFF4304 0.25 -0.2 83,983 - GFF4304 0.25 +0.5 83,983 - GFF4304 0.25 +0.0 83,983 - GFF4304 0.25 -0.1 83,983 - GFF4304 0.25 -1.1 83,983 - GFF4304 0.25 -0.1 84,040 - GFF4304 0.32 -0.6 84,051 + GFF4304 0.33 -0.7 84,052 - GFF4304 0.33 -0.6 84,234 + GFF4304 0.55 +0.2 84,234 + GFF4304 0.55 +0.4 84,234 + GFF4304 0.55 -1.2 84,234 + GFF4304 0.55 -0.5 84,234 + GFF4304 0.55 -0.6 84,235 - GFF4304 0.55 +0.1 84,235 - GFF4304 0.55 -0.5 84,244 - GFF4304 0.56 -0.3 84,244 - GFF4304 0.56 +0.5 84,256 - GFF4304 0.58 -1.0 84,354 + GFF4304 0.69 +0.4 84,354 + GFF4304 0.69 +0.1 84,354 + GFF4304 0.69 -0.9 84,355 - GFF4304 0.69 -0.5 84,355 - GFF4304 0.69 -0.4 84,355 - GFF4304 0.69 -0.3 84,451 + GFF4304 0.81 -0.5 84,451 + GFF4304 0.81 -0.2 84,451 + GFF4304 0.81 -0.5 84,451 + GFF4304 0.81 -0.0 84,451 + GFF4304 0.81 -0.9 84,452 - GFF4304 0.81 +0.6 84,452 - GFF4304 0.81 -1.3 84,452 - GFF4304 0.81 -1.9 84,452 - GFF4304 0.81 +0.3 84,454 - GFF4304 0.81 -0.8 84,454 - GFF4304 0.81 -1.3 84,454 - GFF4304 0.81 -0.1 84,454 - GFF4304 0.81 +1.0 84,543 + +0.4 84,544 - +1.4 84,552 + +0.7 84,552 + +0.0 84,553 - +0.3 84,600 + -0.5 84,600 + +0.2
Or see this region's nucleotide sequence