Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4299 and GFF4300 are separated by 53 nucleotides GFF4300 and GFF4301 are separated by 87 nucleotides GFF4301 and GFF4302 are separated by 89 nucleotides GFF4302 and GFF4303 are separated by 3 nucleotides
GFF4299 - HTH-type transcriptional repressor RspR, at 79,508 to 80,197
GFF4299
GFF4300 - hypothetical protein, at 80,251 to 80,934
GFF4300
GFF4301 - hypothetical protein, at 81,022 to 82,194
GFF4301
GFF4302 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 82,284 to 83,009
GFF4302
GFF4303 - Lipopolysaccharide export system ATP-binding protein LptB, at 83,013 to 83,774
GFF4303
Position (kb) 81
82
83 Strain fitness (log2 ratio) -1
0
1 at 80.112 kb on + strand, within GFF4299 at 80.112 kb on + strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.113 kb on - strand, within GFF4299 at 80.282 kb on + strand at 80.282 kb on + strand at 80.414 kb on + strand, within GFF4300 at 80.415 kb on - strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.498 kb on + strand, within GFF4300 at 80.603 kb on + strand, within GFF4300 at 80.603 kb on + strand, within GFF4300 at 80.604 kb on - strand, within GFF4300 at 80.604 kb on - strand, within GFF4300 at 80.626 kb on - strand, within GFF4300 at 80.676 kb on + strand, within GFF4300 at 80.677 kb on - strand, within GFF4300 at 80.757 kb on - strand, within GFF4300 at 80.759 kb on + strand, within GFF4300 at 80.759 kb on + strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 80.760 kb on - strand, within GFF4300 at 81.080 kb on + strand at 81.081 kb on - strand at 81.081 kb on - strand at 81.137 kb on + strand at 81.254 kb on + strand, within GFF4301 at 81.254 kb on + strand, within GFF4301 at 81.255 kb on - strand, within GFF4301 at 81.255 kb on - strand, within GFF4301 at 81.620 kb on + strand, within GFF4301 at 81.620 kb on + strand, within GFF4301 at 81.620 kb on + strand, within GFF4301 at 81.621 kb on - strand, within GFF4301 at 81.621 kb on - strand, within GFF4301 at 81.687 kb on - strand, within GFF4301 at 81.786 kb on - strand, within GFF4301 at 82.079 kb on + strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.080 kb on - strand at 82.100 kb on - strand at 82.101 kb on + strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.102 kb on - strand at 82.103 kb on + strand at 82.104 kb on - strand at 82.313 kb on - strand at 82.313 kb on - strand at 82.651 kb on + strand, within GFF4302 at 82.651 kb on + strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.652 kb on - strand, within GFF4302 at 82.972 kb on + strand at 82.972 kb on + strand at 83.037 kb on - strand at 83.038 kb on + strand at 83.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 80,112 + GFF4299 0.88 +0.5 80,112 + GFF4299 0.88 +0.2 80,113 - GFF4299 0.88 -0.5 80,113 - GFF4299 0.88 +0.4 80,113 - GFF4299 0.88 +0.8 80,113 - GFF4299 0.88 -0.9 80,282 + +1.0 80,282 + +0.7 80,414 + GFF4300 0.24 -0.8 80,415 - GFF4300 0.24 -0.6 80,498 + GFF4300 0.36 -0.5 80,498 + GFF4300 0.36 +1.4 80,498 + GFF4300 0.36 +0.1 80,603 + GFF4300 0.51 -0.2 80,603 + GFF4300 0.51 -0.4 80,604 - GFF4300 0.52 -0.5 80,604 - GFF4300 0.52 -0.6 80,626 - GFF4300 0.55 -0.1 80,676 + GFF4300 0.62 +0.2 80,677 - GFF4300 0.62 -0.9 80,757 - GFF4300 0.74 -0.6 80,759 + GFF4300 0.74 -0.1 80,759 + GFF4300 0.74 -0.1 80,760 - GFF4300 0.74 -0.1 80,760 - GFF4300 0.74 +0.3 80,760 - GFF4300 0.74 +0.1 81,080 + -1.4 81,081 - +0.5 81,081 - -0.3 81,137 + +0.8 81,254 + GFF4301 0.20 +0.3 81,254 + GFF4301 0.20 -0.0 81,255 - GFF4301 0.20 -0.9 81,255 - GFF4301 0.20 -0.1 81,620 + GFF4301 0.51 +0.1 81,620 + GFF4301 0.51 +0.3 81,620 + GFF4301 0.51 +0.2 81,621 - GFF4301 0.51 -0.1 81,621 - GFF4301 0.51 -0.3 81,687 - GFF4301 0.57 -0.6 81,786 - GFF4301 0.65 -0.2 82,079 + +0.2 82,080 - +0.5 82,080 - +0.2 82,080 - -0.7 82,080 - +0.2 82,080 - +0.6 82,100 - -0.3 82,101 + -0.7 82,102 - +0.3 82,102 - +0.3 82,102 - -1.3 82,102 - +0.7 82,102 - -0.4 82,103 + -0.2 82,104 - +0.4 82,313 - +0.2 82,313 - -0.5 82,651 + GFF4302 0.51 -0.1 82,651 + GFF4302 0.51 -0.2 82,652 - GFF4302 0.51 -0.1 82,652 - GFF4302 0.51 -1.3 82,652 - GFF4302 0.51 -0.6 82,972 + +0.5 82,972 + -0.8 83,037 - -0.1 83,038 + +0.1 83,039 - -0.1
Or see this region's nucleotide sequence