Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4289 and GFF4290 are separated by 149 nucleotides GFF4290 and GFF4291 are separated by 334 nucleotides GFF4291 and GFF4292 are separated by 6 nucleotides
GFF4289 - hypothetical protein, at 69,572 to 70,585
GFF4289
GFF4290 - Peroxiredoxin OsmC, at 70,735 to 71,166
GFF4290
GFF4291 - hypothetical protein, at 71,501 to 72,229
GFF4291
GFF4292 - hypothetical protein, at 72,236 to 73,204
GFF4292
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 70.581 kb on + strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.582 kb on - strand at 70.727 kb on + strand at 70.727 kb on + strand at 71.067 kb on - strand, within GFF4290 at 71.287 kb on + strand at 71.771 kb on + strand, within GFF4291 at 71.771 kb on + strand, within GFF4291 at 71.771 kb on + strand, within GFF4291 at 71.771 kb on + strand, within GFF4291 at 72.044 kb on + strand, within GFF4291 at 72.044 kb on + strand, within GFF4291 at 72.053 kb on - strand, within GFF4291 at 72.068 kb on + strand, within GFF4291 at 72.068 kb on + strand, within GFF4291 at 72.069 kb on - strand, within GFF4291 at 72.069 kb on - strand, within GFF4291 at 72.346 kb on + strand, within GFF4292 at 72.347 kb on - strand, within GFF4292 at 72.347 kb on - strand, within GFF4292 at 72.347 kb on - strand, within GFF4292 at 72.549 kb on + strand, within GFF4292 at 72.627 kb on + strand, within GFF4292 at 72.627 kb on + strand, within GFF4292 at 72.736 kb on - strand, within GFF4292 at 72.748 kb on - strand, within GFF4292 at 72.876 kb on + strand, within GFF4292 at 72.877 kb on - strand, within GFF4292
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 70,581 + +0.2 70,582 - +0.7 70,582 - -0.4 70,582 - -0.1 70,582 - +0.6 70,582 - -0.6 70,727 + +1.3 70,727 + -1.0 71,067 - GFF4290 0.77 +0.1 71,287 + +0.5 71,771 + GFF4291 0.37 -0.1 71,771 + GFF4291 0.37 +0.7 71,771 + GFF4291 0.37 +0.5 71,771 + GFF4291 0.37 -0.4 72,044 + GFF4291 0.74 -0.5 72,044 + GFF4291 0.74 +0.2 72,053 - GFF4291 0.76 -0.3 72,068 + GFF4291 0.78 +0.2 72,068 + GFF4291 0.78 -0.6 72,069 - GFF4291 0.78 -0.4 72,069 - GFF4291 0.78 -0.2 72,346 + GFF4292 0.11 -0.1 72,347 - GFF4292 0.11 +0.3 72,347 - GFF4292 0.11 -1.8 72,347 - GFF4292 0.11 +0.7 72,549 + GFF4292 0.32 +0.2 72,627 + GFF4292 0.40 -0.1 72,627 + GFF4292 0.40 -0.8 72,736 - GFF4292 0.52 +0.2 72,748 - GFF4292 0.53 -0.7 72,876 + GFF4292 0.66 +0.4 72,877 - GFF4292 0.66 +0.1
Or see this region's nucleotide sequence