Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4268 and GFF4269 are separated by 331 nucleotides GFF4269 and GFF4270 overlap by 55 nucleotides GFF4270 and GFF4271 are separated by 85 nucleotides
GFF4268 - hypothetical protein, at 36,952 to 37,659
GFF4268
GFF4269 - hypothetical protein, at 37,991 to 38,308
GFF4269
GFF4270 - hypothetical protein, at 38,254 to 38,670
GFF4270
GFF4271 - Acetyl-coenzyme A synthetase, at 38,756 to 40,672
GFF4271
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1 at 37.065 kb on - strand, within GFF4268 at 37.065 kb on - strand, within GFF4268 at 37.070 kb on + strand, within GFF4268 at 37.203 kb on - strand, within GFF4268 at 37.203 kb on - strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.400 kb on + strand, within GFF4268 at 37.428 kb on - strand, within GFF4268 at 37.487 kb on + strand, within GFF4268 at 37.530 kb on - strand, within GFF4268 at 37.580 kb on + strand, within GFF4268 at 37.750 kb on + strand at 37.850 kb on - strand at 37.906 kb on - strand at 38.149 kb on - strand, within GFF4269 at 38.268 kb on - strand at 38.270 kb on - strand at 38.276 kb on + strand at 38.277 kb on - strand at 38.277 kb on - strand at 38.277 kb on - strand at 38.539 kb on + strand, within GFF4270 at 38.539 kb on + strand, within GFF4270 at 38.566 kb on + strand, within GFF4270 at 38.567 kb on - strand, within GFF4270 at 38.638 kb on + strand at 38.638 kb on + strand at 38.638 kb on + strand at 38.638 kb on + strand at 38.638 kb on + strand at 38.639 kb on - strand at 38.639 kb on - strand at 38.734 kb on - strand at 38.857 kb on - strand at 39.184 kb on - strand, within GFF4271 at 39.222 kb on + strand, within GFF4271 at 39.223 kb on - strand, within GFF4271 at 39.223 kb on - strand, within GFF4271 at 39.246 kb on + strand, within GFF4271
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 37,065 - GFF4268 0.16 -0.4 37,065 - GFF4268 0.16 -0.5 37,070 + GFF4268 0.17 +0.2 37,203 - GFF4268 0.35 -0.3 37,203 - GFF4268 0.35 -0.8 37,223 + GFF4268 0.38 +0.7 37,223 + GFF4268 0.38 +0.6 37,223 + GFF4268 0.38 +1.0 37,400 + GFF4268 0.63 +0.3 37,428 - GFF4268 0.67 -0.5 37,487 + GFF4268 0.76 -1.2 37,530 - GFF4268 0.82 -1.0 37,580 + GFF4268 0.89 -0.1 37,750 + +0.2 37,850 - +0.7 37,906 - +0.4 38,149 - GFF4269 0.50 -0.5 38,268 - +0.2 38,270 - -0.8 38,276 + -0.0 38,277 - +0.7 38,277 - -0.4 38,277 - -0.6 38,539 + GFF4270 0.68 +0.1 38,539 + GFF4270 0.68 -0.0 38,566 + GFF4270 0.75 +0.1 38,567 - GFF4270 0.75 -0.1 38,638 + -0.9 38,638 + -0.1 38,638 + -0.5 38,638 + +1.2 38,638 + +0.8 38,639 - -0.5 38,639 - +0.4 38,734 - +0.9 38,857 - +0.1 39,184 - GFF4271 0.22 +0.1 39,222 + GFF4271 0.24 -0.7 39,223 - GFF4271 0.24 +0.8 39,223 - GFF4271 0.24 -0.6 39,246 + GFF4271 0.26 +0.6
Or see this region's nucleotide sequence