Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4265 and GFF4266 are separated by 3 nucleotides GFF4266 and GFF4267 are separated by 17 nucleotides GFF4267 and GFF4268 are separated by 204 nucleotides
GFF4265 - hypothetical protein, at 34,310 to 35,089
GFF4265
GFF4266 - SOS response-associated protein YedK, at 35,093 to 35,815
GFF4266
GFF4267 - Hydroxyacylglutathione hydrolase, at 35,833 to 36,747
GFF4267
GFF4268 - hypothetical protein, at 36,952 to 37,659
GFF4268
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 34.853 kb on - strand, within GFF4265 at 34.956 kb on + strand, within GFF4265 at 34.956 kb on + strand, within GFF4265 at 34.957 kb on - strand, within GFF4265 at 35.007 kb on - strand, within GFF4265 at 35.198 kb on - strand, within GFF4266 at 35.232 kb on + strand, within GFF4266 at 35.308 kb on + strand, within GFF4266 at 35.309 kb on - strand, within GFF4266 at 35.309 kb on - strand, within GFF4266 at 35.490 kb on + strand, within GFF4266 at 35.490 kb on + strand, within GFF4266 at 35.715 kb on + strand, within GFF4266 at 35.969 kb on + strand, within GFF4267 at 35.969 kb on + strand, within GFF4267 at 35.969 kb on + strand, within GFF4267 at 35.969 kb on + strand, within GFF4267 at 35.970 kb on - strand, within GFF4267 at 35.970 kb on - strand, within GFF4267 at 35.970 kb on - strand, within GFF4267 at 35.970 kb on - strand, within GFF4267 at 35.970 kb on - strand, within GFF4267 at 36.059 kb on + strand, within GFF4267 at 36.059 kb on + strand, within GFF4267 at 36.060 kb on - strand, within GFF4267 at 36.113 kb on + strand, within GFF4267 at 36.113 kb on + strand, within GFF4267 at 36.114 kb on - strand, within GFF4267 at 36.158 kb on + strand, within GFF4267 at 36.159 kb on - strand, within GFF4267 at 36.159 kb on - strand, within GFF4267 at 36.600 kb on + strand, within GFF4267 at 36.601 kb on - strand, within GFF4267 at 36.606 kb on + strand, within GFF4267 at 36.618 kb on - strand, within GFF4267 at 36.760 kb on - strand at 36.837 kb on - strand at 36.865 kb on + strand at 36.871 kb on + strand at 36.872 kb on - strand at 36.962 kb on + strand at 36.962 kb on + strand at 36.963 kb on - strand at 37.065 kb on - strand, within GFF4268 at 37.065 kb on - strand, within GFF4268 at 37.070 kb on + strand, within GFF4268 at 37.203 kb on - strand, within GFF4268 at 37.203 kb on - strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.223 kb on + strand, within GFF4268 at 37.400 kb on + strand, within GFF4268 at 37.428 kb on - strand, within GFF4268 at 37.487 kb on + strand, within GFF4268 at 37.530 kb on - strand, within GFF4268 at 37.580 kb on + strand, within GFF4268
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 34,853 - GFF4265 0.70 -0.5 34,956 + GFF4265 0.83 -1.3 34,956 + GFF4265 0.83 +0.5 34,957 - GFF4265 0.83 -0.4 35,007 - GFF4265 0.89 -0.6 35,198 - GFF4266 0.15 -0.3 35,232 + GFF4266 0.19 +0.2 35,308 + GFF4266 0.30 +0.3 35,309 - GFF4266 0.30 +0.6 35,309 - GFF4266 0.30 -0.5 35,490 + GFF4266 0.55 -1.2 35,490 + GFF4266 0.55 +0.2 35,715 + GFF4266 0.86 +1.3 35,969 + GFF4267 0.15 +0.9 35,969 + GFF4267 0.15 +0.7 35,969 + GFF4267 0.15 +1.3 35,969 + GFF4267 0.15 +0.5 35,970 - GFF4267 0.15 +0.7 35,970 - GFF4267 0.15 +1.1 35,970 - GFF4267 0.15 +1.8 35,970 - GFF4267 0.15 +1.0 35,970 - GFF4267 0.15 +0.9 36,059 + GFF4267 0.25 +0.7 36,059 + GFF4267 0.25 +0.7 36,060 - GFF4267 0.25 +1.5 36,113 + GFF4267 0.31 +1.1 36,113 + GFF4267 0.31 +0.1 36,114 - GFF4267 0.31 +0.8 36,158 + GFF4267 0.36 +0.5 36,159 - GFF4267 0.36 +1.5 36,159 - GFF4267 0.36 +0.7 36,600 + GFF4267 0.84 +1.3 36,601 - GFF4267 0.84 +1.7 36,606 + GFF4267 0.84 +0.7 36,618 - GFF4267 0.86 +0.2 36,760 - +0.2 36,837 - +0.3 36,865 + -0.5 36,871 + +0.4 36,872 - +0.7 36,962 + +1.6 36,962 + -0.1 36,963 - +0.4 37,065 - GFF4268 0.16 -0.4 37,065 - GFF4268 0.16 -0.5 37,070 + GFF4268 0.17 +0.2 37,203 - GFF4268 0.35 -0.3 37,203 - GFF4268 0.35 -0.8 37,223 + GFF4268 0.38 +0.7 37,223 + GFF4268 0.38 +0.6 37,223 + GFF4268 0.38 +1.0 37,400 + GFF4268 0.63 +0.3 37,428 - GFF4268 0.67 -0.5 37,487 + GFF4268 0.76 -1.2 37,530 - GFF4268 0.82 -1.0 37,580 + GFF4268 0.89 -0.1
Or see this region's nucleotide sequence