Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4251 and GFF4252 are separated by 178 nucleotides GFF4252 and GFF4253 are separated by 61 nucleotides GFF4253 and GFF4254 overlap by 4 nucleotides
GFF4251 - Zinc-type alcohol dehydrogenase-like protein, at 21,677 to 22,693
GFF4251
GFF4252 - putative HTH-type transcriptional regulator YybR, at 22,872 to 23,246
GFF4252
GFF4253 - putative protein, at 23,308 to 24,315
GFF4253
GFF4254 - Polyphosphate:AMP phosphotransferase, at 24,312 to 25,799
GFF4254
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 22.431 kb on + strand, within GFF4251 at 22.431 kb on + strand, within GFF4251 at 22.432 kb on - strand, within GFF4251 at 22.432 kb on - strand, within GFF4251 at 22.432 kb on - strand, within GFF4251 at 22.432 kb on - strand, within GFF4251 at 22.678 kb on - strand at 22.737 kb on + strand at 22.738 kb on - strand at 22.738 kb on - strand at 22.789 kb on + strand at 22.802 kb on - strand at 22.802 kb on - strand at 22.836 kb on - strand at 22.893 kb on + strand at 22.894 kb on - strand at 23.091 kb on + strand, within GFF4252 at 23.245 kb on - strand at 23.245 kb on - strand at 23.320 kb on + strand at 23.711 kb on - strand, within GFF4253 at 23.711 kb on - strand, within GFF4253 at 23.977 kb on + strand, within GFF4253 at 23.977 kb on + strand, within GFF4253 at 24.455 kb on - strand at 24.511 kb on + strand, within GFF4254 at 24.512 kb on - strand, within GFF4254 at 24.589 kb on + strand, within GFF4254 at 24.589 kb on + strand, within GFF4254 at 24.590 kb on - strand, within GFF4254 at 24.634 kb on + strand, within GFF4254 at 24.764 kb on - strand, within GFF4254 at 24.973 kb on + strand, within GFF4254 at 24.974 kb on - strand, within GFF4254
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 22,431 + GFF4251 0.74 -0.3 22,431 + GFF4251 0.74 -1.8 22,432 - GFF4251 0.74 -0.6 22,432 - GFF4251 0.74 -0.0 22,432 - GFF4251 0.74 +0.4 22,432 - GFF4251 0.74 +0.0 22,678 - +0.5 22,737 + -0.6 22,738 - +0.2 22,738 - -0.3 22,789 + +0.4 22,802 - +0.4 22,802 - -0.2 22,836 - -0.2 22,893 + -0.1 22,894 - +0.7 23,091 + GFF4252 0.58 -0.4 23,245 - +0.1 23,245 - +0.6 23,320 + -0.1 23,711 - GFF4253 0.40 +1.2 23,711 - GFF4253 0.40 -0.2 23,977 + GFF4253 0.66 -0.9 23,977 + GFF4253 0.66 +0.3 24,455 - +0.0 24,511 + GFF4254 0.13 -0.1 24,512 - GFF4254 0.13 -0.6 24,589 + GFF4254 0.19 -0.4 24,589 + GFF4254 0.19 +0.5 24,590 - GFF4254 0.19 +0.4 24,634 + GFF4254 0.22 +0.9 24,764 - GFF4254 0.30 -1.5 24,973 + GFF4254 0.44 -0.4 24,974 - GFF4254 0.44 +0.3
Or see this region's nucleotide sequence