Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4215 and GFF4216 are separated by 398 nucleotides GFF4216 and GFF4217 overlap by 1 nucleotides GFF4217 and GFF4218 are separated by 228 nucleotides
GFF4215 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 244,052 to 245,200
GFF4215
GFF4216 - 2-halobenzoate 1,2-dioxygenase large subunit, at 245,599 to 246,876
GFF4216
GFF4217 - Anthranilate 1,2-dioxygenase small subunit, at 246,876 to 247,409
GFF4217
GFF4218 - putative enoyl-CoA hydratase echA12, at 247,638 to 248,471
GFF4218
Position (kb) 245
246
247 Strain fitness (log2 ratio) -1
0
1 at 244.611 kb on + strand, within GFF4215 at 244.987 kb on - strand, within GFF4215 at 245.422 kb on + strand at 245.686 kb on + strand at 245.744 kb on - strand, within GFF4216 at 245.929 kb on + strand, within GFF4216 at 245.971 kb on + strand, within GFF4216 at 245.971 kb on + strand, within GFF4216 at 245.972 kb on - strand, within GFF4216 at 245.989 kb on + strand, within GFF4216 at 245.989 kb on + strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 245.990 kb on - strand, within GFF4216 at 246.046 kb on + strand, within GFF4216 at 246.047 kb on - strand, within GFF4216 at 246.238 kb on + strand, within GFF4216 at 246.301 kb on + strand, within GFF4216 at 246.334 kb on + strand, within GFF4216 at 246.335 kb on - strand, within GFF4216 at 246.457 kb on + strand, within GFF4216 at 246.458 kb on - strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.700 kb on + strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.701 kb on - strand, within GFF4216 at 246.847 kb on + strand at 246.848 kb on - strand at 246.973 kb on - strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.044 kb on + strand, within GFF4217 at 247.234 kb on + strand, within GFF4217 at 247.234 kb on + strand, within GFF4217 at 247.235 kb on - strand, within GFF4217 at 247.260 kb on + strand, within GFF4217 at 247.308 kb on + strand, within GFF4217 at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.387 kb on - strand at 247.714 kb on - strand at 247.800 kb on - strand, within GFF4218
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 244,611 + GFF4215 0.49 -0.5 244,987 - GFF4215 0.81 +0.5 245,422 + -0.1 245,686 + +0.5 245,744 - GFF4216 0.11 -0.7 245,929 + GFF4216 0.26 +1.2 245,971 + GFF4216 0.29 -0.3 245,971 + GFF4216 0.29 +0.1 245,972 - GFF4216 0.29 +0.1 245,989 + GFF4216 0.31 +1.1 245,989 + GFF4216 0.31 -0.4 245,990 - GFF4216 0.31 +0.9 245,990 - GFF4216 0.31 +0.2 245,990 - GFF4216 0.31 -0.7 246,046 + GFF4216 0.35 -0.8 246,047 - GFF4216 0.35 -0.3 246,238 + GFF4216 0.50 +0.8 246,301 + GFF4216 0.55 -1.3 246,334 + GFF4216 0.58 -1.1 246,335 - GFF4216 0.58 +0.1 246,457 + GFF4216 0.67 -0.7 246,458 - GFF4216 0.67 -0.4 246,700 + GFF4216 0.86 -0.7 246,700 + GFF4216 0.86 +0.4 246,700 + GFF4216 0.86 +0.8 246,700 + GFF4216 0.86 +0.6 246,700 + GFF4216 0.86 -0.7 246,701 - GFF4216 0.86 +0.6 246,701 - GFF4216 0.86 -1.3 246,701 - GFF4216 0.86 +0.4 246,847 + -0.4 246,848 - -0.7 246,973 - GFF4217 0.18 -0.2 247,044 + GFF4217 0.31 +0.7 247,044 + GFF4217 0.31 +0.9 247,044 + GFF4217 0.31 +0.5 247,044 + GFF4217 0.31 +0.1 247,234 + GFF4217 0.67 -0.6 247,234 + GFF4217 0.67 +0.7 247,235 - GFF4217 0.67 -0.2 247,260 + GFF4217 0.72 -0.2 247,308 + GFF4217 0.81 -1.3 247,387 - +0.4 247,387 - +0.2 247,387 - -0.7 247,387 - -0.2 247,387 - -0.6 247,714 - -1.1 247,800 - GFF4218 0.19 +1.7
Or see this region's nucleotide sequence