Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4212 and GFF4213 overlap by 4 nucleotides GFF4213 and GFF4214 are separated by 2 nucleotides GFF4214 and GFF4215 are separated by 219 nucleotides
GFF4212 - Lipopolysaccharide export system ATP-binding protein LptB, at 241,219 to 242,004
GFF4212
GFF4213 - hypothetical protein, at 242,001 to 242,957
GFF4213
GFF4214 - High-affinity branched-chain amino acid transport system permease protein LivH, at 242,960 to 243,832
GFF4214
GFF4215 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 244,052 to 245,200
GFF4215
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 241.994 kb on - strand at 242.104 kb on + strand, within GFF4213 at 242.293 kb on + strand, within GFF4213 at 242.293 kb on + strand, within GFF4213 at 242.294 kb on - strand, within GFF4213 at 242.294 kb on - strand, within GFF4213 at 242.465 kb on - strand, within GFF4213 at 242.627 kb on - strand, within GFF4213 at 242.629 kb on + strand, within GFF4213 at 242.629 kb on + strand, within GFF4213 at 242.630 kb on - strand, within GFF4213 at 242.666 kb on - strand, within GFF4213 at 242.752 kb on + strand, within GFF4213 at 242.752 kb on + strand, within GFF4213 at 242.872 kb on + strand at 242.875 kb on + strand at 242.875 kb on + strand at 242.876 kb on - strand at 242.988 kb on + strand at 242.988 kb on + strand at 242.988 kb on + strand at 242.989 kb on - strand at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.064 kb on + strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.065 kb on - strand, within GFF4214 at 243.066 kb on + strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.067 kb on - strand, within GFF4214 at 243.181 kb on + strand, within GFF4214 at 243.181 kb on + strand, within GFF4214 at 243.485 kb on - strand, within GFF4214 at 243.747 kb on + strand at 243.747 kb on + strand at 243.747 kb on + strand at 243.748 kb on - strand at 243.780 kb on + strand at 243.781 kb on - strand at 243.781 kb on - strand at 243.781 kb on - strand at 244.054 kb on - strand at 244.054 kb on - strand at 244.138 kb on - strand at 244.143 kb on + strand at 244.143 kb on + strand at 244.264 kb on - strand, within GFF4215 at 244.321 kb on - strand, within GFF4215 at 244.321 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.465 kb on - strand, within GFF4215 at 244.494 kb on + strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.495 kb on - strand, within GFF4215 at 244.532 kb on + strand, within GFF4215 at 244.611 kb on + strand, within GFF4215
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 241,994 - +0.3 242,104 + GFF4213 0.11 +0.1 242,293 + GFF4213 0.31 +0.4 242,293 + GFF4213 0.31 +0.3 242,294 - GFF4213 0.31 +0.0 242,294 - GFF4213 0.31 -0.2 242,465 - GFF4213 0.48 +0.7 242,627 - GFF4213 0.65 +1.3 242,629 + GFF4213 0.66 +0.5 242,629 + GFF4213 0.66 +0.7 242,630 - GFF4213 0.66 +0.1 242,666 - GFF4213 0.69 -0.2 242,752 + GFF4213 0.78 -0.7 242,752 + GFF4213 0.78 -0.8 242,872 + -0.4 242,875 + +0.1 242,875 + -0.7 242,876 - -0.1 242,988 + -0.3 242,988 + +0.1 242,988 + +0.3 242,989 - -0.3 243,064 + GFF4214 0.12 -0.1 243,064 + GFF4214 0.12 -0.3 243,064 + GFF4214 0.12 +0.7 243,064 + GFF4214 0.12 -0.1 243,064 + GFF4214 0.12 +0.9 243,064 + GFF4214 0.12 +0.1 243,065 - GFF4214 0.12 +0.1 243,065 - GFF4214 0.12 +0.1 243,065 - GFF4214 0.12 -0.2 243,065 - GFF4214 0.12 -0.3 243,066 + GFF4214 0.12 -0.3 243,067 - GFF4214 0.12 -0.1 243,067 - GFF4214 0.12 -0.4 243,067 - GFF4214 0.12 +1.1 243,181 + GFF4214 0.25 -0.3 243,181 + GFF4214 0.25 -0.7 243,485 - GFF4214 0.60 +0.1 243,747 + +0.6 243,747 + +0.3 243,747 + -0.1 243,748 - -2.1 243,780 + +1.4 243,781 - +0.2 243,781 - -0.4 243,781 - +0.6 244,054 - +0.3 244,054 - -0.7 244,138 - -0.3 244,143 + +0.2 244,143 + -0.9 244,264 - GFF4215 0.18 -0.4 244,321 - GFF4215 0.23 +0.7 244,321 - GFF4215 0.23 -0.2 244,465 - GFF4215 0.36 -0.6 244,465 - GFF4215 0.36 +0.2 244,465 - GFF4215 0.36 -0.6 244,465 - GFF4215 0.36 +0.2 244,494 + GFF4215 0.38 -1.9 244,495 - GFF4215 0.39 -0.5 244,495 - GFF4215 0.39 -0.1 244,495 - GFF4215 0.39 -0.8 244,532 + GFF4215 0.42 -0.0 244,611 + GFF4215 0.49 -0.5
Or see this region's nucleotide sequence