Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4178 and GFF4179 overlap by 4 nucleotides GFF4179 and GFF4180 are separated by 130 nucleotides GFF4180 and GFF4181 are separated by 233 nucleotides
GFF4178 - Fumarate reductase flavoprotein subunit, at 192,662 to 194,410
GFF4178
GFF4179 - hypothetical protein, at 194,407 to 194,748
GFF4179
GFF4180 - L-2-hydroxyglutarate dehydrogenase, at 194,879 to 195,982
GFF4180
GFF4181 - GTP-binding protein TypA/BipA, at 196,216 to 198,045
GFF4181
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1 at 193.923 kb on + strand, within GFF4178 at 193.923 kb on + strand, within GFF4178 at 193.965 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.010 kb on + strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.011 kb on - strand, within GFF4178 at 194.042 kb on - strand, within GFF4178 at 194.043 kb on + strand, within GFF4178 at 194.043 kb on + strand, within GFF4178 at 194.044 kb on - strand, within GFF4178 at 194.106 kb on + strand, within GFF4178 at 194.181 kb on + strand, within GFF4178 at 194.181 kb on + strand, within GFF4178 at 194.182 kb on - strand, within GFF4178 at 194.194 kb on + strand, within GFF4178 at 194.194 kb on + strand, within GFF4178 at 194.195 kb on - strand, within GFF4178 at 194.199 kb on + strand, within GFF4178 at 194.462 kb on + strand, within GFF4179 at 194.663 kb on + strand, within GFF4179 at 194.663 kb on + strand, within GFF4179 at 194.664 kb on - strand, within GFF4179 at 194.790 kb on + strand at 194.790 kb on + strand at 194.790 kb on + strand at 194.790 kb on + strand at 194.790 kb on + strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.845 kb on + strand at 195.041 kb on + strand, within GFF4180 at 195.041 kb on + strand, within GFF4180 at 195.041 kb on + strand, within GFF4180 at 195.041 kb on + strand, within GFF4180 at 195.042 kb on - strand, within GFF4180 at 195.042 kb on - strand, within GFF4180 at 195.042 kb on - strand, within GFF4180 at 195.098 kb on + strand, within GFF4180 at 195.098 kb on + strand, within GFF4180 at 195.098 kb on + strand, within GFF4180 at 195.098 kb on + strand, within GFF4180 at 195.098 kb on + strand, within GFF4180 at 195.099 kb on - strand, within GFF4180 at 195.179 kb on + strand, within GFF4180 at 195.180 kb on - strand, within GFF4180 at 195.572 kb on + strand, within GFF4180 at 195.573 kb on - strand, within GFF4180 at 195.716 kb on + strand, within GFF4180 at 195.717 kb on - strand, within GFF4180 at 195.717 kb on - strand, within GFF4180 at 196.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 193,923 + GFF4178 0.72 +0.2 193,923 + GFF4178 0.72 +1.0 193,965 + GFF4178 0.74 -0.7 194,010 + GFF4178 0.77 -0.7 194,010 + GFF4178 0.77 -0.1 194,010 + GFF4178 0.77 +0.2 194,010 + GFF4178 0.77 +0.1 194,010 + GFF4178 0.77 +0.8 194,010 + GFF4178 0.77 -0.1 194,010 + GFF4178 0.77 -0.2 194,010 + GFF4178 0.77 -0.1 194,011 - GFF4178 0.77 -0.8 194,011 - GFF4178 0.77 +0.3 194,011 - GFF4178 0.77 +0.3 194,011 - GFF4178 0.77 +0.4 194,011 - GFF4178 0.77 +0.0 194,011 - GFF4178 0.77 -0.4 194,011 - GFF4178 0.77 +0.2 194,011 - GFF4178 0.77 +0.4 194,042 - GFF4178 0.79 +0.4 194,043 + GFF4178 0.79 -0.5 194,043 + GFF4178 0.79 +1.1 194,044 - GFF4178 0.79 -0.3 194,106 + GFF4178 0.83 +0.0 194,181 + GFF4178 0.87 +0.1 194,181 + GFF4178 0.87 +0.1 194,182 - GFF4178 0.87 -0.7 194,194 + GFF4178 0.88 +0.6 194,194 + GFF4178 0.88 +0.5 194,195 - GFF4178 0.88 +0.4 194,199 + GFF4178 0.88 +0.0 194,462 + GFF4179 0.16 +0.2 194,663 + GFF4179 0.75 +1.3 194,663 + GFF4179 0.75 -0.4 194,664 - GFF4179 0.75 -1.0 194,790 + -0.1 194,790 + -1.0 194,790 + -0.6 194,790 + +0.8 194,790 + +0.8 194,791 - -0.2 194,791 - -0.2 194,791 - +0.6 194,791 - +1.2 194,791 - +1.1 194,845 + +0.5 195,041 + GFF4180 0.15 -0.1 195,041 + GFF4180 0.15 -0.4 195,041 + GFF4180 0.15 +0.1 195,041 + GFF4180 0.15 -1.5 195,042 - GFF4180 0.15 +0.4 195,042 - GFF4180 0.15 +1.0 195,042 - GFF4180 0.15 -0.5 195,098 + GFF4180 0.20 +0.4 195,098 + GFF4180 0.20 -1.0 195,098 + GFF4180 0.20 +0.2 195,098 + GFF4180 0.20 -0.3 195,098 + GFF4180 0.20 -0.2 195,099 - GFF4180 0.20 +0.7 195,179 + GFF4180 0.27 -0.9 195,180 - GFF4180 0.27 +0.2 195,572 + GFF4180 0.63 +0.1 195,573 - GFF4180 0.63 +0.3 195,716 + GFF4180 0.76 -0.9 195,717 - GFF4180 0.76 +0.1 195,717 - GFF4180 0.76 -0.0 196,047 + -1.0
Or see this region's nucleotide sequence