Strain Fitness in Xanthobacter sp. DMC5 around GFF4178

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4176 and GFF4177 are separated by 5 nucleotidesGFF4177 and GFF4178 are separated by 30 nucleotidesGFF4178 and GFF4179 overlap by 4 nucleotidesGFF4179 and GFF4180 are separated by 130 nucleotides GFF4176 - hypothetical protein, at 191,421 to 192,392 GFF4176 GFF4177 - hypothetical protein, at 192,398 to 192,631 GFF4177 GFF4178 - Fumarate reductase flavoprotein subunit, at 192,662 to 194,410 GFF4178 GFF4179 - hypothetical protein, at 194,407 to 194,748 GFF4179 GFF4180 - L-2-hydroxyglutarate dehydrogenase, at 194,879 to 195,982 GFF4180 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -1 0 1at 191.728 kb on + strand, within GFF4176at 191.728 kb on + strand, within GFF4176at 191.828 kb on + strand, within GFF4176at 191.906 kb on - strand, within GFF4176at 192.411 kb on + strandat 192.411 kb on + strandat 192.468 kb on + strand, within GFF4177at 192.468 kb on + strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.700 kb on - strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.786 kb on + strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.877 kb on - strand, within GFF4178at 193.047 kb on + strand, within GFF4178at 193.048 kb on - strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.075 kb on - strand, within GFF4178at 193.161 kb on + strand, within GFF4178at 193.162 kb on - strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.189 kb on - strand, within GFF4178at 193.189 kb on - strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.243 kb on - strand, within GFF4178at 193.243 kb on - strand, within GFF4178at 193.278 kb on + strand, within GFF4178at 193.279 kb on - strand, within GFF4178at 193.390 kb on - strand, within GFF4178at 193.390 kb on - strand, within GFF4178at 193.534 kb on - strand, within GFF4178at 193.540 kb on - strand, within GFF4178at 193.563 kb on + strand, within GFF4178at 193.605 kb on + strand, within GFF4178at 193.605 kb on + strand, within GFF4178at 193.629 kb on + strand, within GFF4178at 193.630 kb on - strand, within GFF4178at 193.648 kb on + strand, within GFF4178at 193.649 kb on - strand, within GFF4178at 193.650 kb on + strand, within GFF4178at 193.650 kb on + strand, within GFF4178at 193.651 kb on - strand, within GFF4178at 193.651 kb on - strand, within GFF4178at 193.713 kb on + strand, within GFF4178at 193.713 kb on + strand, within GFF4178at 193.714 kb on - strand, within GFF4178at 193.725 kb on + strand, within GFF4178at 193.725 kb on + strand, within GFF4178at 193.726 kb on - strand, within GFF4178at 193.726 kb on - strand, within GFF4178at 193.726 kb on - strand, within GFF4178at 193.755 kb on + strand, within GFF4178at 193.756 kb on - strand, within GFF4178at 193.771 kb on - strand, within GFF4178at 193.771 kb on - strand, within GFF4178at 193.923 kb on + strand, within GFF4178at 193.923 kb on + strand, within GFF4178at 193.965 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.010 kb on + strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.011 kb on - strand, within GFF4178at 194.042 kb on - strand, within GFF4178at 194.043 kb on + strand, within GFF4178at 194.043 kb on + strand, within GFF4178at 194.044 kb on - strand, within GFF4178at 194.106 kb on + strand, within GFF4178at 194.181 kb on + strand, within GFF4178at 194.181 kb on + strand, within GFF4178at 194.182 kb on - strand, within GFF4178at 194.194 kb on + strand, within GFF4178at 194.194 kb on + strand, within GFF4178at 194.195 kb on - strand, within GFF4178at 194.199 kb on + strand, within GFF4178at 194.462 kb on + strand, within GFF4179at 194.663 kb on + strand, within GFF4179at 194.663 kb on + strand, within GFF4179at 194.664 kb on - strand, within GFF4179at 194.790 kb on + strandat 194.790 kb on + strandat 194.790 kb on + strandat 194.790 kb on + strandat 194.790 kb on + strandat 194.791 kb on - strandat 194.791 kb on - strandat 194.791 kb on - strandat 194.791 kb on - strandat 194.791 kb on - strandat 194.845 kb on + strandat 195.041 kb on + strand, within GFF4180at 195.041 kb on + strand, within GFF4180at 195.041 kb on + strand, within GFF4180at 195.041 kb on + strand, within GFF4180at 195.042 kb on - strand, within GFF4180at 195.042 kb on - strand, within GFF4180at 195.042 kb on - strand, within GFF4180at 195.098 kb on + strand, within GFF4180at 195.098 kb on + strand, within GFF4180at 195.098 kb on + strand, within GFF4180at 195.098 kb on + strand, within GFF4180at 195.098 kb on + strand, within GFF4180at 195.099 kb on - strand, within GFF4180at 195.179 kb on + strand, within GFF4180at 195.180 kb on - strand, within GFF4180

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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191,728 + GFF4176 0.32 -0.8
191,728 + GFF4176 0.32 -0.2
191,828 + GFF4176 0.42 -0.6
191,906 - GFF4176 0.50 +0.4
192,411 + -1.4
192,411 + -0.8
192,468 + GFF4177 0.30 +0.2
192,468 + GFF4177 0.30 -1.5
192,484 - GFF4177 0.37 +0.0
192,484 - GFF4177 0.37 -1.1
192,484 - GFF4177 0.37 +0.8
192,700 - +0.3
192,735 + -0.5
192,735 + +0.5
192,735 + -0.4
192,735 + -1.0
192,786 + +0.0
192,787 - -0.6
192,787 - -0.1
192,787 - -0.3
192,787 - +0.1
192,787 - +0.0
192,787 - -0.2
192,877 - GFF4178 0.12 +0.8
193,047 + GFF4178 0.22 +0.2
193,048 - GFF4178 0.22 +0.0
193,074 + GFF4178 0.24 -1.4
193,074 + GFF4178 0.24 +0.0
193,074 + GFF4178 0.24 +0.4
193,075 - GFF4178 0.24 -0.1
193,161 + GFF4178 0.29 +0.2
193,162 - GFF4178 0.29 +0.5
193,188 + GFF4178 0.30 -0.5
193,188 + GFF4178 0.30 +0.0
193,188 + GFF4178 0.30 +1.5
193,189 - GFF4178 0.30 +0.3
193,189 - GFF4178 0.30 +0.2
193,242 + GFF4178 0.33 +0.4
193,242 + GFF4178 0.33 +0.2
193,242 + GFF4178 0.33 -0.1
193,242 + GFF4178 0.33 +0.4
193,243 - GFF4178 0.33 -0.7
193,243 - GFF4178 0.33 +0.2
193,278 + GFF4178 0.35 +0.7
193,279 - GFF4178 0.35 -0.5
193,390 - GFF4178 0.42 +0.1
193,390 - GFF4178 0.42 +0.1
193,534 - GFF4178 0.50 -1.4
193,540 - GFF4178 0.50 -0.2
193,563 + GFF4178 0.52 +0.0
193,605 + GFF4178 0.54 -0.6
193,605 + GFF4178 0.54 +0.1
193,629 + GFF4178 0.55 +0.0
193,630 - GFF4178 0.55 -0.9
193,648 + GFF4178 0.56 -0.5
193,649 - GFF4178 0.56 +0.3
193,650 + GFF4178 0.56 +0.8
193,650 + GFF4178 0.56 -0.2
193,651 - GFF4178 0.57 +0.6
193,651 - GFF4178 0.57 -0.4
193,713 + GFF4178 0.60 -0.5
193,713 + GFF4178 0.60 -0.4
193,714 - GFF4178 0.60 +0.1
193,725 + GFF4178 0.61 +0.4
193,725 + GFF4178 0.61 +0.6
193,726 - GFF4178 0.61 +0.5
193,726 - GFF4178 0.61 -1.1
193,726 - GFF4178 0.61 -0.6
193,755 + GFF4178 0.62 -0.6
193,756 - GFF4178 0.63 -0.5
193,771 - GFF4178 0.63 -0.5
193,771 - GFF4178 0.63 +0.3
193,923 + GFF4178 0.72 +0.2
193,923 + GFF4178 0.72 +1.0
193,965 + GFF4178 0.74 -0.7
194,010 + GFF4178 0.77 -0.7
194,010 + GFF4178 0.77 -0.1
194,010 + GFF4178 0.77 +0.2
194,010 + GFF4178 0.77 +0.1
194,010 + GFF4178 0.77 +0.8
194,010 + GFF4178 0.77 -0.1
194,010 + GFF4178 0.77 -0.2
194,010 + GFF4178 0.77 -0.1
194,011 - GFF4178 0.77 -0.8
194,011 - GFF4178 0.77 +0.3
194,011 - GFF4178 0.77 +0.3
194,011 - GFF4178 0.77 +0.4
194,011 - GFF4178 0.77 +0.0
194,011 - GFF4178 0.77 -0.4
194,011 - GFF4178 0.77 +0.2
194,011 - GFF4178 0.77 +0.4
194,042 - GFF4178 0.79 +0.4
194,043 + GFF4178 0.79 -0.5
194,043 + GFF4178 0.79 +1.1
194,044 - GFF4178 0.79 -0.3
194,106 + GFF4178 0.83 +0.0
194,181 + GFF4178 0.87 +0.1
194,181 + GFF4178 0.87 +0.1
194,182 - GFF4178 0.87 -0.7
194,194 + GFF4178 0.88 +0.6
194,194 + GFF4178 0.88 +0.5
194,195 - GFF4178 0.88 +0.4
194,199 + GFF4178 0.88 +0.0
194,462 + GFF4179 0.16 +0.2
194,663 + GFF4179 0.75 +1.3
194,663 + GFF4179 0.75 -0.4
194,664 - GFF4179 0.75 -1.0
194,790 + -0.1
194,790 + -1.0
194,790 + -0.6
194,790 + +0.8
194,790 + +0.8
194,791 - -0.2
194,791 - -0.2
194,791 - +0.6
194,791 - +1.2
194,791 - +1.1
194,845 + +0.5
195,041 + GFF4180 0.15 -0.1
195,041 + GFF4180 0.15 -0.4
195,041 + GFF4180 0.15 +0.1
195,041 + GFF4180 0.15 -1.5
195,042 - GFF4180 0.15 +0.4
195,042 - GFF4180 0.15 +1.0
195,042 - GFF4180 0.15 -0.5
195,098 + GFF4180 0.20 +0.4
195,098 + GFF4180 0.20 -1.0
195,098 + GFF4180 0.20 +0.2
195,098 + GFF4180 0.20 -0.3
195,098 + GFF4180 0.20 -0.2
195,099 - GFF4180 0.20 +0.7
195,179 + GFF4180 0.27 -0.9
195,180 - GFF4180 0.27 +0.2

Or see this region's nucleotide sequence